Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq476 150 2e-31 seq74 107 2e-18 seq2933 95.1 1e-14 seq992 86.0 6e-12 >seq476 Length=239761 Score = 150 bits (166), Expect = 2e-31 Identities = 168/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| |||||| || || ||||| ||| |||||||| ||||| ||||||| ||| | Sbjct 226101 CTTCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCT 226042 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | |||||||| |||||||| ||||| || ||||| || |||||||| ||||||| Sbjct 226041 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATG 225982 Query 11772 CTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAG 11828 | |||| ||||| ||| | | | ||| | | ||||||||| |||||||| | Sbjct 225981 CAACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTG 225922 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 | ||||||||||| ||| ||| ||||| || || ||||||||| Sbjct 225921 CCTTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAA 225878 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||| || Sbjct 225772 ATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTGGAA 225713 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 |||||| ||||||| ||||| | || || || | |||||| ||| | | ||| Sbjct 225712 TCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAGATT 225653 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||||| ||||| ||||| || ||||||||||||| || || || ||| | Sbjct 225652 TTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAATGACG 225593 Query 12079 TTCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 ||| || | ||| ||| || ||||||||| | ||| Sbjct 225592 TTCATCATCAGTCAATCTAATCCAATCATCAAGATC 225557 >seq74 Length=781666 Score = 107 bits (118), Expect = 2e-18 Identities = 136/185 (74%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||||| ||| |||||||||||||||| || |||||||| | | ||||| | ||| || Sbjct 485175 ATATAAATTTGTAGTATATGGTTCAATAGATTCATTATTTCCAAGAATTTGTGCTGTTGA 485116 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 || |||||||| ||||||| || | |||||| | ||||||| || |||| | || Sbjct 485115 AGCGGTAGGCATCGGTGCTAATAACAATGAATTTCTAACTCCATGTTTAGCAATTTTTTT 485056 Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGT 37347 ||||| | || ||| ||||| | || || || || | || |||||||||||| || Sbjct 485055 TTTTAATATATCCCAGTCCCAAAGGTCAGTAGGCTTTACATT--CCACATATCATACTGC 484998 Query 37348 AGAAT 37352 | ||| Sbjct 484997 AAAAT 484993 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 |||||| | ||||| ||||| | | |||||||||| | ||||||||||| ||| Sbjct 483988 AAAATCGTCACCCCAGACATCTGAAAGACCTGGACATTTACGTGGACACATTAAGCTCCA 483929 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 || ||| || | ||| ||||||| |||||||| ||| | || |||||| Sbjct 483928 AGGTTGATCAGCCTCAAYACGTCTCATAAATTCATCAGGTATCCAAAGAGCTAAAAATAA 483869 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAG-AAAATCGAATA 38119 |||| | ||| | | ||||| || || ||| || | ||| || | | || | ||| Sbjct 483868 ATCTCTAGTTTTTTCTTCTTTATTACCAGTATTTTTACGTAA-CTCGGTATAAGTGTATA 483810 Query 38120 TATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 |||||||||||| || || ||||||| | | ||| || ||||| Sbjct 483809 CATCAGCGTGCCAAGGCTCAATATAAACAGCAACTGCCCCAGGTCT 483764 >seq2933 Length=10010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||||| ||| | ||||| ||||| || || |||||||| | | ||||||| ||| || Sbjct 826 ATATAAATTTGTTGTATAGGGTTCTATAGATTCATTATTGCCAAGAATTTGAGCTGTTGA 885 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 ||||||||||| ||||||| | | |||||| | || ||| || |||| | | Sbjct 886 AGCAGTAGGCATGGGTGCTAACAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTC 945 Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGT 37347 ||||| | | ||||| ||||||||| | || || | || |||||||||||| ||| Sbjct 946 TTTTAATATTTCCCAATTCCATAAATCACTGGGCTTTACATT--CCACATATCATACTGT 1003 Query 37348 AGAAT 37352 | ||| Sbjct 1004 AAAAT 1008 >seq992 Length=79738 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 |||||||| ||||| ||||| | | ||| ||||||| | ||||||||||| ||| Sbjct 54025 AAAATCATCACCCCAGACATCTGAAAGTCCGGGACATTTACGTGGACACATTAAGCTCCA 53966 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 || ||| || || ||| ||||||| |||||||| ||| | || |||||| Sbjct 53965 AGATTGATCAGCCTCAACACGTCTCATAAATTCATCAGGTATCCAAAGAGCTAAAAATAA 53906 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120 |||| | ||| | | ||||| || || ||| || | ||| | | || |||| Sbjct 53905 ATCTCTAGTTTTTTCTTCTTTATTGCCAGTATTTTTACGTAACTCTGTATAAGTATATAT 53846 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 |||||| ||||| || || || |||| | | ||| |||||||| Sbjct 53845 ATCAGCATGCCAAGGCTCAATGTAAACAGCAACTGCCCCTGGTCT 53801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468491786571280