Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq476 120 4e-22 seq2933 102 1e-16 seq992 102 1e-16 seq74 89.7 7e-13 >seq476 Length=239761 Score = 120 bits (132), Expect = 4e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 36424 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 36483 || |||||||||||| || | ||||||||||| ||||| || || || || ||||| Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 36484 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAA 36543 ||||| || |||||||||||||| || | || |||||| | |||||||||| | | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAG 225656 Query 36544 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 36602 ||||||||| || || || || || |||||||| || ||||| || || ||||| Sbjct 225655 ATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAAT 225597 Score = 113 bits (124), Expect = 6e-20 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || |||||| ||| | || ||| ||| || | ||| ||||||| || | || || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 | |||||||| | ||||| |||||| || || || ||||| || || ||||| ||| Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 36302 ATAAGTCTCTCTCCATAACCGGCACTG---TCATGTATCCACTTTTGAGCCCAATCGGCC 36358 | | || || ||| || || || ||| |||||| || |||||||||| ||| Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTGCC 225920 Query 36359 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 36404 |||||||||||||| ||||| || || || |||||||| | | ||| Sbjct 225919 TTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAAAAGT 225874 >seq2933 Length=10010 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 65226 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 65285 ||||| ||||| | ||| |||||||| || | ||||||||| ||||| ||||| ||||| Sbjct 839 GTATAGGGTTCTATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATG 898 Query 65286 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 65345 ||||| | ||| || |||||||| ||||| | | ||||| ||||||| |||| Sbjct 899 GGTGCTAACAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 958 Query 65346 CAATTCCAAAGATC 65359 |||||||| | ||| Sbjct 959 CAATTCCATAAATC 972 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 ||||||| | ||||| |||||||| |||||||| || || || | ||||| |||||| Sbjct 1615 TATTGTACAACTTCAGTACAAAGATTGCTACACTTAATTGTACCAAGATTTTTTTGATTG 1674 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 || || ||||| ||||| ||||| | || | || ||||||||||||| ||||| Sbjct 1675 CTTTTAGCATTACATGCATCTTTATACAACATATACGGCATACCAGTTTCAATTTGAGA 1733 >seq992 Length=79738 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 ||||| | |||||||| | || ||||||||||||||| || ||||| ||||| ||| Sbjct 42893 TATGTTTTATATGGTCCATATTTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATAA 42952 Query 65481 TAAATGGTTTCGAAGATCTTCT-TATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 65539 ||||||||||| | || || | | || |||||| ||||| ||||||| ||||| Sbjct 42953 TAAATGGTTTC-ATGAATTTGTATGTTAAGATCTCTAGCTTCTTTAGTATCAAAAGGATA 43011 Query 65540 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 65589 || | |||||| |||||||||||||| | |||||| || |||| Sbjct 43012 TTTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAATAG 43061 >seq74 Length=781666 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 || || || || ||||| ||||||||||||||||| || || || | ||||| ||||| Sbjct 484407 TACTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTCTGATTG 484348 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 || || ||||| ||||| ||||| || | |||| ||||||||||||| ||||| Sbjct 484347 CTTTTGGCATTACAGGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 484289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658126423499080