Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq476 136 6e-27 seq2933 104 3e-17 seq992 100 4e-16 seq74 96.9 5e-15 >seq476 Length=239761 Score = 136 bits (150), Expect = 6e-27 Identities = 166/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || |||||| ||| || || ||| ||| || | ||| ||||||| || | || || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 | |||||||| | ||||| ||||| || || || ||||| || || ||||| ||| Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 50104 ACAAGTCTCTCTCCATAACTGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 50160 || | || || ||| || | || ||| ||| |||||| || |||||||||| ||| Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTGCC 225920 Query 50161 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 |||||||||||||| ||||| ||||| ||||||||||| | | ||| Sbjct 225919 TTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAAAAGT 225874 Score = 113 bits (124), Expect = 6e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 50226 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 50285 || ||| ||||| || || | ||||||||||| ||||| || || || || || || Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 50286 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAA 50345 ||||| || |||||||||||||| || | || |||||| | ||||||||||| | | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAG 225656 Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 ||||||||| || || || || || |||||||| || ||||| || || |||||| Sbjct 225655 ATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAATG 225596 >seq2933 Length=10010 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 79105 GTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATA 79164 ||||| ||||| | ||||||||||| || | ||||||||| ||||| || || ||||| Sbjct 839 GTATAGGGTTCTATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATG 898 Query 79165 GGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCC 79224 ||||| | ||| || |||||||| ||||| | ||||| ||||||| |||| Sbjct 899 GGTGCTAACAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 958 Query 79225 CAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 |||| ||| | |||| || |||||||| | |||||| |||| ||| Sbjct 959 CAATTCCATAAATCACTGGGCTTTACATTCCACATATCATACTGTAAAAT 1008 Score = 102 bits (112), Expect = 1e-16 Identities = 154/213 (72%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 79290 TGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAA 79349 ||||||| || | | ||||| ||| | ||||| |||||||||||||| || ||||| Sbjct 1089 TGATCCTTGATACGATGAATAAGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 1148 Query 79350 TGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA-T 79408 || || ||||| | ||||| || || | ||| || | | ||| ||| ||| | Sbjct 1149 CGCACCATAATACAAAGTTTCAAATATTTGTAAATTAAGCTTTCGTGATTC-AGGTGAGC 1207 Query 79409 CAAATGGATAAT---TTAA--GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 |||||||| ||| ||| ||||||||| ||||| || ||||| | |||||| || Sbjct 1208 CAAATGGA-AATCGCATAATTGAGAATAAA----TCTGCCAACCCTTGGATACCAATTCC 1262 Query 79464 GATAGGTCTATGTCTCTTATTAGAAATTTCAGC 79496 ||||| | ||||| ||||||||| ||||||| Sbjct 1263 AATAGGACGATGTCGTTTATTAGAAGTTTCAGC 1295 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 ||||||| | |||||| || || || ||||||||||| || || | ||||| |||||| Sbjct 1615 TATTGTACAACTTCAGTACAAAGATTGCTACACTTAATTGTACCAAGATTTTTTTGATTG 1674 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 || || ||||| ||||| ||||| | || |||| ||||||||||||| ||||| Sbjct 1675 CTTTTAGCATTACATGCATCTTTATACAACATATACGGCATACCAGTTTCAATTTGAGA 1733 >seq992 Length=79738 Score = 100 bits (110), Expect = 4e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 79296 TGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355 || |||||||| ||| ||||| | || |||| ||||||||| || ||||| || || Sbjct 42889 TGGGTATGTTTTATATGGTCCATATTTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACC 42948 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415 |||||||||||||| ||| | | || |||||| |||||| ||||||| || Sbjct 42949 ATAATAAATGGTTTCATGAATTTGTATGTTAAGATCTCTAGCTTCTTTAGTATCAAAAGG 43008 Query 79416 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 79468 ||| || | |||||| |||||||||||||| | |||||| || |||| Sbjct 43009 ATATTTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAATAG 43061 >seq74 Length=781666 Score = 96.9 bits (106), Expect = 5e-15 Identities = 128/173 (74%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 79105 GTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATA 79164 ||||||||||| | |||||||||||||| | |||||| || ||||| || || ||||| Sbjct 485162 GTATATGGTTCAATAGATTCATTATTTCCAAGAATTTGTGCTGTTGAAGCGGTAGGCATC 485103 Query 79165 GGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGAT- 79221 ||||| | || || |||||||| || ||| | | ||||| | ||||| | || Sbjct 485102 GGTGCTAATAACAATGAATTTCTAACTCC--ATGTTTAGCAATTTTTTTTTTTA-ATATA 485046 Query 79222 TCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 ||||| |||||||| |||| || |||||||| | |||||| || | ||| Sbjct 485045 TCCCAGTCCCAAAGGTCAGTAGGCTTTACATTCCACATATCATACTGCAAAAT 484993 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 || || || |||||||| || || |||||||||||||| || || | ||||| ||||| Sbjct 484407 TACTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTCTGATTG 484348 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 || || ||||| ||||| ||||| || | | || ||||||||||||| ||||| Sbjct 484347 CTTTTGGCATTACAGGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 484289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718218188984680