Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq476 149 6e-31 >seq476 Length=239761 Score = 149 bits (164), Expect = 6e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 ||||||||| ||| || || || ||| |||||||||||||| ||||||| ||| || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14015 |||||||||| ||||||||| || || || ||||| || || || |||||||| || Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 14016 ATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAt 14075 | ||| | ||| ||||| | |||||| | | ||||||||| |||||| || | Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTGCC 225920 Query 14076 ttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 || ||||| | | | ||| |||||||| |||||||||||| Sbjct 225919 TTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAA 225878 Score = 129 bits (142), Expect = 6e-25 Identities = 131/168 (78%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||| ||||||||||| | ||||||||||||||| || ||||| || ||||| ||| || Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCA 14259 || |||||||| |||||||| || | ||| ||||| ||| |||||| ||| | | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AAAATCGTTCAACAA 225657 Query 14260 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGT 14307 |||||||||||| || ||||| ||| ||||||||||| |||| || Sbjct 225656 GATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGT 225609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479694197165800