Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq476 127 3e-24 seq2933 102 1e-16 seq992 98.7 1e-15 seq74 93.3 6e-14 >seq476 Length=239761 Score = 127 bits (140), Expect = 3e-24 Identities = 164/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||||||| ||| | || ||| ||| || | ||| ||||||| || | || || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 | |||||||| | ||||| |||||| || || || ||||| || || ||||| ||| Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 42209 ATAAGTCTCTCTCCATAACCGGCACTG---TCATGTATCCACTTTTGAGCCCAATCGGCC 42265 | | || || ||| || || || ||| |||||| || |||||||||| ||| Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTGCC 225920 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311 |||||||||||||| ||||| ||||| ||||||||||| | | ||| Sbjct 225919 TTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAAAAGT 225874 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42331 AACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTG 42390 || ||||||||| || || | ||||||||||||||||| || || || || || || Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 42391 AAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAA 42450 ||||| || |||||||| ||||| || || || |||||| | ||||||||||| | | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAG 225656 Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 |||||| || || || || || || |||||||| || ||||| || || ||||| Sbjct 225655 ATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAATG 225596 Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCAT 42542 ||| || || ||| || ||||||||| Sbjct 225595 ACGTTCATCATCAGTCAATCTAATCCAATCAT 225564 >seq2933 Length=10010 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 ||||||| || |||||| |||||||| |||||||| || || || | ||||| |||||| Sbjct 1615 TATTGTACAACTTCAGTACAAAGATTGCTACACTTAATTGTACCAAGATTTTTTTGATTG 1674 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 || || ||||| ||||| ||||| | ||| |||| ||||||||||||| ||||| Sbjct 1675 CTTTTAGCATTACATGCATCTTTATACAACATATACGGCATACCAGTTTCAATTTGAGA 1733 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 71188 GTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 71247 ||||| ||||| | || |||||||| || | ||||||||| ||||| ||||| ||||| Sbjct 839 GTATAGGGTTCTATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATG 898 Query 71248 GGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCC 71307 ||||| | ||| | |||||||| ||| ||| ||||| ||||||| |||| Sbjct 899 GGTGCTAACAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 958 Query 71308 CAATTCCAAAGATC 71321 |||||||| | ||| Sbjct 959 CAATTCCATAAATC 972 >seq992 Length=79738 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 ||||| | |||||||| | ||| |||||||||||||| || ||||| || |||||| Sbjct 42893 TATGTTTTATATGGTCCATATTTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATAA 42952 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||||||||| ||| | | || |||||| ||||| ||||||| ||||| Sbjct 42953 TAAATGGTTTCATGAATTTGTATGTTAAGATCTCTAGCTTCTTTAGTATCAAAAGGATAT 43012 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAG 71551 || | |||||| |||||||||||||| | ||||| || |||| Sbjct 43013 TTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAATAG 43061 >seq74 Length=781666 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 || || || |||||||| ||||||||||||||||| || || || | ||||| ||||| Sbjct 484407 TACTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTCTGATTG 484348 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 || || ||||| ||||| ||||| || | | | || ||||||||||||| ||||| Sbjct 484347 CTTTTGGCATTACAGGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 484289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671091909854120