Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq306 87.8 2e-12 seq489 84.2 2e-11 >seq306 Length=365715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | ||||| |||| |||||| ||||||||||| ||||| || Sbjct 85324 CCACCTCTTAAACGAAGTACTAAGTGAAGTGTAGACTCTTTTTGTATATTGTAGTCAGAG 85383 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| | ||| || |||||| | || |||||||| ||||| || || Sbjct 85384 AGTGTGCGACCATCTTCCAATTGCTTGCCAGCAAAAATAAGACGTTGTTGATCCGGGGGA 85443 Query 143078 ATGCCT 143083 |||||| Sbjct 85444 ATGCCT 85449 >seq489 Length=245457 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || || | |||||||||||||| ||||||||||| || || | | ||||| Sbjct 239804 AACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGACAGAGTACGCCCATCTTC 239745 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCT 143083 |||||||| |||||| | |||| |||||||||||| || || || ||| Sbjct 239744 AAGTTGTTTGCCAGCAAATATCAAACGTTGCTGATCAGGTGGAATACCT 239696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506978674497840