Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq489 102 6e-17 seq308 86.0 5e-12 >seq489 Length=245457 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| | ||| || || ||||| || |||||||| ||||||||||| Sbjct 239821 CCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 239762 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | | ||||| | |||||||||||| ||||||||||||| || || |||| Sbjct 239761 AGAGTACGCCCATCTTCAAGTTGTTTGCCAGCAAATATCAAACGTTGCTGATCAGGTGGA 239702 Query 15257 ATTCCT 15262 || ||| Sbjct 239701 ATACCT 239696 >seq308 Length=372676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 ||||||| | || ||||| ||| | |||||||||||||| || || || ||||||| Sbjct 102708 CGTCTTCAAGCTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGCGGGATACCTTCTT 102649 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 | || |||||| || ||| |||| || || ||| | || || || | || | Sbjct 102648 TATCTTGGATTTTGGCTTTGACATTTTCAATAGTGTCGGAAGACTCAACCTCGAGAGTGA 102589 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||| || ||||| || || || |||||||||||||| || Sbjct 102588 TGGTCTTCCCTGTAAGGGTCTTCACAAAAATTTGCATGTT 102549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362154317949417