Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq476 158 1e-33 >seq476 Length=239761 Score = 158 bits (174), Expect = 1e-33 Identities = 138/169 (82%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||| ||||| || ||||||||||||||||||||||| ||||| |||||| |||||| Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTA 13538 ||| |||||||||||||||||||| | ||| |||||||| ||| |||||| ||| | | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AAAATCGTTCAACAA 225657 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 ||||| ||||| || || || |||||||||||| || | || ||| Sbjct 225656 GATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 225608 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 13170 ATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTT 13229 || ||||||||||| || ||||| || ||| |||| || ||||| | |||| || Sbjct 226104 ATACTTCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTT 226045 Query 13230 TTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAA 13289 | || | |||||||| |||||||| || || |||||||| ||||| || || |||| Sbjct 226044 TCTTCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAA 225985 Query 13290 ACGCTATCAACCTTTCACCATACG-TACTATTTTTACTCTCTATCCACTTTCTGGCCCAG 13348 | || | |||||||||||| | | | || | | | || |||||| || ||||| Sbjct 225984 ATGCAACTAACCTTTCACCAAAAGTTGCTTTGCTATCACT-TATCCATTTAAGAGCCCAA 225926 Query 13349 TTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 | ||| || | ||| || || ||| |||| || || ||||||||| Sbjct 225925 TCTGCCTTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAA 225878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430952791105074