Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq208 178 3e-39 seq476 147 5e-30 seq308 109 1e-18 seq306 96.9 8e-15 seq489 84.2 5e-11 >seq208 Length=490746 Score = 178 bits (196), Expect = 3e-39 Identities = 223/301 (74%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 238590 CTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGA 238649 || |||||||| || || ||||| |||||| |||||| |||||| ||||| |||| Sbjct 174790 CTTTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCATGGTTTCCTACGC 174731 Query 238650 ATGTATTGGGCTAAAAAGATACTTGAATGGACTAGAT-CTCCAAAGGAAGCTCTTAGAT- 238707 ||||| ||||| ||||||||||| ||||||||| ||| ||||| | ||| || || | Sbjct 174730 ATGTACTGGGCAAAAAAGATACTAGAATGGACT-GATACTCCAGATAGAGCACT-AGCTG 174673 Query 238708 ATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAG 238767 || |||||||| || || ||||| | || ||| || |||| || | || | Sbjct 174672 ATGCAATTTATCTCAATGACAAATATAGCATGGATGGTCGTGACCCTAGTGGTTTTGTTG 174613 Query 238768 GTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTG 238827 | |||||||||||||||||||| | || ||| || |||| || ||| || |||| Sbjct 174612 GGTGTATGTGGTCAATATGTGGCATTCATGATCAGGGATGGAGAGAAAGAGAAATTTTTG 174553 Query 238828 GAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTTTTA 238887 ||||| |||| || ||||| ||||||||| |||| ||| ||||| |||||||||| | Sbjct 174552 GAAAAATTAGGTATATGAACTATGAAGGATGCAAGAGAAAGTTTGACATAAATGCTTTCA 174493 Query 238888 T 238888 | Sbjct 174492 T 174492 Score = 91.5 bits (100), Expect = 3e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 237973 AAGTGGTATTTATACAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCATCTCATA 238032 ||||| | ||||||| ||||| | || ||||||||||||||||||| ||| ||| | | Sbjct 175632 AAGTGCCAGTTATACAGGTTGATTCCCATAATATTGTACCTTGTTGGGTAGCCTCTGACA 175573 Query 238033 AACAAGAATACGGTGCTAGAACATTACGTAAGAAAATAAA 238072 |||||||||| ||| |||||| |||| || ||||| || Sbjct 175572 AACAAGAATATTCTGCAAGAACAATACGAAACAAAATCAA 175533 >seq476 Length=239761 Score = 147 bits (162), Expect = 5e-30 Identities = 133/167 (80%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGC---GCGCCTTAC 269125 ||||| | ||| || | || |||||||| |||||||||| |||||| || ||| Sbjct 225906 TGTGTAAAAAAGAAGGCAGATTGGGCTCTTAAATGGATAAGTGATAGCAAAGCAACTTTT 225965 Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||||||||||| ||||| ||||| ||||||||||| || || || |||||| Sbjct 225966 GGTGAAAGGTTAGTTGCATTTGCTGCTGTGGAAGGTATATTTTTCTCTGGAAGTTTTGCT 226025 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTT 269232 || | |||||||||||||||||||| | ||||||||||||||||| Sbjct 226026 GCATTATTTTGGTTGAAGAAAAGAGGATTAATGCCAGGATTAACTTT 226072 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || |||||||| | | ||||| || ||||| |||||||| || || || | |||| Sbjct 225617 GCATTTTTTGCTGCTTCAGATGGCATTGTTAATGAAAATCTTGTTGAACGATTTTCTCAA 225676 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 || || || | |||| || ||||||||||| |||||||| ||| || || ||||| Sbjct 225677 GAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGATTCCAAATAATGATGGAGAATATA 225736 Query 268979 CATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||| ||||| || ||||||| ||||| ||||| Sbjct 225737 CATTCAGAAATGTATAGCTTATTAATTGATACATATAT 225774 >seq308 Length=372676 Score = 109 bits (120), Expect = 1e-18 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || || ||||| || || | || | |||||||| || || || || || || || Sbjct 102739 TTTTGGATGTTATAATCCGACAATGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATC 102680 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | |||||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 102679 AAACGTTGTTGATCTGGCGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCA 102620 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | || ||| || || ||||| || || || ||||| || ||||| || || ||||| Sbjct 102619 ATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAA 102560 Query 104552 ATCTGCATTTTG-TGTA 104567 || ||||| ||| |||| Sbjct 102559 ATTTGCATGTTGATGTA 102543 >seq306 Length=365715 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| | |||||||| || | |||||| ||||| || ||||| |||||||| Sbjct 85324 CCACCTCTTAAACGAAGTACTAAGTGAAGTGTAGACTCTTTTTGTATATTGTAGTCAGAG 85383 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | ||| ||||| | ||| || ||||||||||| || | |||||||| || || Sbjct 85384 AGTGTGCGACCATCTTCCAATTGCTTGCCAGCAAAAATAAGACGTTGTTGATCCGGGGGA 85443 Query 104453 ATTCCT 104458 || ||| Sbjct 85444 ATGCCT 85449 >seq489 Length=245457 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || ||||| || | || | ||||||||||| ||||| || || || || Sbjct 239821 CCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 239762 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | || ||||| |||||||| |||||||| || | | || |||||||| || Sbjct 239761 AGAGTACGCCCATCTTCAAGTTGTTTGCCAGCAAATATCAAACGTTGCTGATCAGGTGGA 239702 Query 104453 ATTCCT 104458 || ||| Sbjct 239701 ATACCT 239696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151315241329996