Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq607 134 2e-26 seq166 109 7e-19 seq649 87.8 2e-12 >seq607 Length=188712 Score = 134 bits (148), Expect = 2e-26 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 ||||| || ||||| | ||||| ||||| | |||| || ||||| ||||||||| Sbjct 55598 TTAGGRTGCAAACACGTCAAAGGTATTTTGCTGTATGGTCCACCTGGAACTGGTAAAACA 55539 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAAT 164616 ||||||||| || |||| ||| | |||||| || || || |||||||||||| Sbjct 55538 TTAATGGCTAGACAAATTGGACAAA-TGTTAAATGCACGTGAACCC--AAAATTGTTAAT 55482 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || ||| || | ||| |||||||||| ||||| || ||||| ||| | |||| ||| || Sbjct 55481 GGCCCTCAAATTTTGGACAAATATGTTGGTGAATCTGAAGCAAATATAAGAAGGTTATTC 55422 Query 164677 CAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTT 164710 || |||||||||||| ||||||||| | ||| Sbjct 55421 GCAGAYGCTGAAGAAGAAGAAAAGAAAGTATGTT 55388 >seq166 Length=548810 Score = 109 bits (120), Expect = 7e-19 Identities = 129/172 (75%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 7224 ATCACCTTCTTCACGATGATTAAATCCTAATCGA-TTTAAATTAGATTTTGATCCATAAG 7282 || |||||||||||||| ||| ||| ||| || | ||||| || || | | || Sbjct 535975 ATTACCTTCTTCACGATTGGTAAGTCC-AATTGAGTCTAAATATGAACGTGTGCTGTTAG 536033 Query 7283 CATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGA 7342 ||||||||| | |||| ||||| ||||| | | ||||||||| |||||||||| | Sbjct 536034 CATCCCAAACTTTTACATCTTTTTCAGATAATTCTTTAGAATTTGTTGATCCTTTAATAA 536093 Query 7343 ACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAA 7394 ||||||| | |||||| || | ||||||||||||| |||||||| || || Sbjct 536094 ACCATAATAATTCTTCAACGACACCACGCCAAAACACCCTTTTTGTTGTCAA 536145 >seq649 Length=185080 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||||||| |||| |||||||||||||||||| | ||||||||| || ||||| || Sbjct 159772 AATACCTCAAATTGGTGATAAGTTTGCTTCTAGGCACGGTCAAAAAGGAACTTGTGGAAT 159831 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 || | ||||||||||||||||| ||| || ||||| || ||| |||| || Sbjct 159832 ACAATACAGACAAGAAGATATGCCTTTCACTTGTGAAGGTATCACACCTGATATTATAAT 159891 Query 19474 TAACCCACATGCT 19486 ||| || || ||| Sbjct 159892 TAATCCTCACGCT 159904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595830013369200