Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq484 215 8e-52 seq2038 181 2e-41 seq80 111 2e-20 >seq484 Length=233097 Score = 215 bits (238), Expect = 8e-52 Identities = 210/270 (78%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| | | || || |||||||| |||||||| |||||||| || Sbjct 220934 CGCCAAACGTCATCGCAAAGTGTTGCGTGAYAACATCCARGGAATCACYAAGCCAGCCAT 220875 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| | ||||| ||||| ||||| || ||| ||||||||||| | || ||||| | Sbjct 220874 TCGTCGGTTAGCTCGCCGTGGAGGAGTAAAACGTATCTCTGGATTGATATACGAAGAAAC 220815 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 ||| | ||| ||||| | ||||| ||| ||| |||| |||||| || || || || | Sbjct 220814 TCGAGGTGTGTTGAAAGTGTTCCTGGAGAACGTAATCCGTGATGCCGTTACA-TACACAG 220756 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||| | ||||| |||||| ||||||| |||||||||| | |||||||||| Sbjct 220755 AGCACGCCAAAAGGAAGACCGTCACCGCCATGGACGTCGTCTATGCTCTAAAACGTCAAG 220696 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||||| |||| ||||| ||| |||||| Sbjct 220695 GCCGTACTCTTTACGGTTTCGGAGGTTAAT 220666 Score = 125 bits (138), Expect = 1e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16505 CGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTG 16564 || ||||| ||||| || ||| | || || ||| | || ||||| | ||| | ||| ||| Sbjct 233097 CGCCGTGGAGGAGTGAAACGTATTTCCGGTTTGATTTACGAAGAAACTCGCGGTGTGTTG 233038 Query 16565 AAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGT 16624 ||| | ||||| | | ||| |||| || || || || || |||||||| || | Sbjct 233037 AAGGTGTTCCTGGAAAACGTAATCCGCGACGCCGTCACGTACACTGAGCACGCCAAGAGG 232978 Query 16625 AAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTAT 16684 ||||| |||||| ||||||| | ||||| || |||||||||||||||| | |||| Sbjct 232977 AAGACCGTCACCGCCATGGACGTTGTCTACGCTCTGAAACGTCAAGGCCGCACTCTTTAC 232918 Query 16685 GGTTTTGGAAGTTAATCTT 16703 ||||| ||| ||||||||| Sbjct 232917 GGTTTCGGAGGTTAATCTT 232899 >seq2038 Length=19517 Score = 181 bits (200), Expect = 2e-41 Identities = 188/244 (77%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||||||||| ||||| || || ||||| |||| || ||||| ||| Sbjct 16661 CGTGATAACATCCAAGGAATCACTAAGCCCGCAATTCGTCGGTTGGCACGCCGTGGAGGA 16602 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| |||| || || ||||||| || | | ||| ||| ||||| | || || Sbjct 16601 GTGAAACGTATCTCCGGTCTGATCTATGAGGAAACTTGTGGTGTATTGAAAGTATTTCTG 16542 Query 16577 AAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635 | | ||| || | ||||||| || || || ||||| || || || | ||||||||||| Sbjct 16541 GAAAACGTAATTCGTGATGCTGTTACA-TACACCGAACATGCAAAGAGGAAGACTGTCAC 16483 Query 16636 CTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAG 16695 | |||||||| ||||||| | || || ||||||||||||| |||| ||||||||| | Sbjct 16482 CGCCATGGATGTCGTCTACACTTTAAAGCGTCAAGGCCGTACTCTTTACGGTTTTGGAGG 16423 Query 16696 TTAA 16699 |||| Sbjct 16422 TTAA 16419 >seq80 Length=763085 Score = 111 bits (122), Expect = 2e-20 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||||||||| ||||| || || ||||| |||| || ||||| ||| Sbjct 668505 CGTGACAACATCCAAGGAATCACTAAGCCCGCAATTCGTCGGTTGGCACGCCGTGGAGGA 668446 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| |||| || ||| | ||||| || | ||||| ||| ||||| | || || Sbjct 668445 GTGAAACGTATCTCCGGTTTGATATATGAGGAAACTCGTGGTGTATTGAAAGTATTTCTG 668386 Query 16577 AAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAA 16620 | | ||| |||| ||||||| || || || ||||| || || || Sbjct 668385 GAAAACGTAATCCGTGATGCTGTTACA-TACACCGAACATGCCAA 668342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070046051441