Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq975 104 3e-18 seq437 93.3 5e-15 >seq975 Length=84256 Score = 104 bits (114), Expect = 3e-18 Identities = 131/174 (75%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 12476 TTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACCTA 12535 || |||| | | ||||||| | ||| ||||| ||||||||||||||||||||||||||| Sbjct 59932 TTAAATTCTGTTCGAAATAGATATAATTTTAAAGTATATATGGCTTTTGCCATCCACCTT 59873 Query 12536 GCGTGGTGGAATGCACCCGGTTTTCGAAATTTTACT-TAACTGCAGGGAACTTTACCA-- 12592 || ||| ||||||| ||||| | |||||| | | | ||| | || || |||| Sbjct 59872 GCCATGTGATATGCACCAGGTTTCCTAAATTTGATTCCACCTGGA-GGTACACCACCAAG 59814 Query 12593 ATAAATATCTGAACAAGCTCCAAAAGTTCCCGGTAGTCTTCCCTTGGTTGATTT 12646 ||||||| || |||| |||||||| || ||||| ||||| | ||| | ||| Sbjct 59813 ATAAATAATTG-ACAA-ATCCAAAAGCTCGCGGTAATCTTCACGGGGTAGTTTT 59762 >seq437 Length=273353 Score = 93.3 bits (102), Expect = 5e-15 Identities = 192/280 (69%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 12749 TCAATTTCGCCCCAGCTCTCTCGAAATCTTTTAAATAAAGGTACATCAGGACCT---GAG 12805 ||||||||| |||| | | | ||| ||||||| | ||| ||||||||||| || Sbjct 75255 TCAATTTCGGGCCAGGCTTGTTGGAATTTTTTAAAAATAGGAACATCAGGACCAATAGAA 75196 Query 12806 GTTGTAGGTATTTTAAGTTCAAAAACACCCCTGAGGATAAGTTCAAATATGTGATGCCTG 12865 || | || ||||| ||||||||||| || || | | ||| |||| || |||| Sbjct 75195 TTTATTTTTAATTTAATTTCAAAAACACTTCTTAGCACTAATTCGTATATATGTCGCCTA 75136 Query 12866 CAAGGCAAATACAATAGttttttttCAAGCAACCGTTCCAGTGAAACTGCAG-CTCC-TT 12923 ||||| ||||| || || ||| | | | || |||||| | || | ||| | || || Sbjct 75135 CAAGGTAAATATAAAAGATTTCGTCCTATCAGTTGTTCCAATATAA-TACAGGCACCATT 75077 Query 12924 TACTTGATCCTAGATTTGCAGCAGTAGTATCACAGCATAGAGCTTTAATAAAGTCTGGAA 12983 || || || | |||| || || |||||||| |||| ||||| || | || | Sbjct 75076 TAACCGACCCGTG-TTTGATGCCGTCGTATCACAACATAAAGCTTGTATTTTATTTGTTA 75018 Query 12984 TTCCCCAATCATTAATAGCGTCAAACATTGCATCAGCTTG 13023 ||||||||||| ||| ||||| ||||||| ||||| Sbjct 75017 CGCCCCAATCATTTATAATATCAAATATTGCATTTGCTTG 74978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63301473879473