Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1645 104 5e-18 seq960 100 6e-17 seq443 95.1 2e-15 seq2493 93.3 8e-15 seq1220 93.3 8e-15 seq1159 93.3 8e-15 seq3386 91.5 3e-14 seq40 89.7 1e-13 seq1332 87.8 4e-13 seq2592 86.0 1e-12 seq1945 84.2 4e-12 seq167 82.4 1e-11 >seq1645 Length=25744 Score = 104 bits (114), Expect = 5e-18 Identities = 171/241 (71%), Gaps = 7/241 (3%) Strand=Plus/Plus Query 4468 TACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTT-AGATTTAGG 4526 ||||| ||||||||||||| |||||| || |||| | | ||| ||| ||| ||| Sbjct 11410 TACGACAAAAATAATTATGCTATTCATTACTCAAATCTACAGCAAGCTTTGAGAGC-AGG 11468 Query 4527 TTTAGTTCTTAAGAAAATACACCTAG---TCTTGAAATTTGAGCAATCAGACTGGCTCAA 4583 ||| |||| |||| | || ||| | ||||| ||||||||||| || || | || Sbjct 11469 CTTAAAA-TTAAAAAAAAATACATAGAATTATTGAA-TTTGAGCAATCTGATTGAATGAA 11526 Query 4584 ATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaa 4643 | ||||| ||||||||||| | || | | || | ||||| ||||| | ||| Sbjct 11527 AGTTTATATAGATAAAAATACAAAGTTAAGACAGATGGCAACAAATGATTTCGATATAAA 11586 Query 4644 CTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATA 4703 |||||||||| |||||||||| | || ||||||| || ||| | |||| ||||| | Sbjct 11587 CTTTTATAAAACAATGAATAATTCAGTATTTGGAAGAACAATGATGGATGTTAGAAAACA 11646 Query 4704 T 4704 | Sbjct 11647 T 11647 >seq960 Length=86101 Score = 100 bits (110), Expect = 6e-17 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 7935 TGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACT 7994 |||| |||| |||| | || | | ||| | ||| | || |||||||||||||||||| Sbjct 8562 TGTTGAACACTATATTAAATAGTTTACCAGTCGAATTACATCTACCAGGTTATCAGTACT 8621 Query 7995 GCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTT 8054 | || ||||| || || |||| || ||| |||||| |||| | | |||||||| || Sbjct 8622 GTGGACCGGGAACTAATTTAGGAAAAAGACTAGCTCTAGGTCAGACCGGTATAAACGGTT 8681 Query 8055 TGGACGCTGCGTGTAAGGAACACGATATAGCTTAC 8089 |||| | ||||| | || || |||||||||||| Sbjct 8682 TGGATTCAGCGTGCAGAGACCATGATATAGCTTAC 8716 >seq443 Length=259826 Score = 95.1 bits (104), Expect = 2e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 7935 TGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACT 7994 |||| |||| |||||| || | | ||| | ||| | || ||||||||||||||| || Sbjct 190242 TGTTGAACACTATAATAAATAGTTTACCAGTCGAATTACATCTACCAGGTTATCAGTTCT 190301 Query 7995 GCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTT 8054 | || ||||| || || |||| || | | |||||| |||| | | ||||||||| || Sbjct 190302 GTGGACCGGGAACTAATTTAGGAAAAATACTAGCTCTAGGTCAGACCGGTATAAATGGTT 190361 Query 8055 TGGACGCTGCGTGTAAGGAACACGATATAGCTTAC 8089 |||| | |||| | || || |||||||||||| Sbjct 190362 TGGATTCAGCGTTCAGAGACCATGATATAGCTTAC 190396 >seq2493 Length=13782 Score = 93.3 bits (102), Expect = 8e-15 Identities = 331/514 (64%), Gaps = 17/514 (3%) Strand=Plus/Plus Query 4459 ACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTA 4518 |||||| | || || || || |||||| | ||||||||| ||| ||| ||| || | | Sbjct 2513 ACAACTTTATATGACAAGAAAAATTATATAATTCACTATGAAACTTTAAAATTATATATT 2572 Query 4519 GATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGG 4578 | ||||||||| | | ||||| || ||| || ||||| ||||| ||| Sbjct 2573 AAGTTAGGTTTAAAATTAGAAAAAATTCATAGAGTGTTAGAATTTAGTCAATCTCCTTGG 2632 Query 4579 CTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaa 4638 | ||| ||||| ||| ||||| || | |||||||||||| || ||| Sbjct 2633 TTAAAAGTTTATATTGATTTCAATACTAATCTTAGATCAAAAGCTAAGAATGATTTTGAA 2692 Query 4639 aaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGA 4698 ||| | | || ||||||||||||||| |||| ||| |||||| |||||| || Sbjct 2693 AAAGAATATTTCAAATTAATGAATAATAGTGTTTATGGTCGTACGATGATGAATGTTAGA 2752 Query 4699 AAATATAAAGATATATATTTAAGAACAAAGTGGCAAAGTCAATACAATGTATCGGATTTA 4758 || || |||||| | ||| | || || | ||| ||| ||| |||| Sbjct 2753 AATCATGTTGATATAAAATTATGTACTAATGGACAA---CAA------GTAGACCRTTTA 2803 Query 4759 GTATGT-AGACCAAACTTCCACAGCCTTACAATTTTTGATGAGGATATGGTTATAGTTGA 4817 | ||| | ||| || || | || ||||||||| | || | | | | || | Sbjct 2804 AT-TGTAAAACCGAATTTTGATAGAAGGACAATTTTTACAGGAAATTTAGCTGCAATTCA 2862 Query 4818 ACTTAAAAAAGCTAGAGTTTGCTTCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGA 4877 | |||||| | | | | ||||| | || || ||| |||| | || | ||||| Sbjct 2863 CATGAAAAAAACAAAAATAAAATTCAAACAACCAATTTATATAGGAATGTGTGTTTTAGA 2922 Query 4878 TTTATCTAAAATTTATATTTATGACTTTCATTACAATTATGTTAT---GCAAAATTATGT 4934 |||||||||||| || ||||| || |||| || |||| || | ||| |||| Sbjct 2923 TTTATCTAAAATGGTGATGTATGATTT---TTACTATAATGTAATAAAGATAAAATATGG 2979 Query 4935 AAATACCTCAAAATTATTGTACACTGACACAGAT 4968 ||||| |||||||| || | ||| |||||| Sbjct 2980 AAATAATGTTAAATTATTATATAATGATACAGAT 3013 >seq1220 Length=47472 Score = 93.3 bits (102), Expect = 8e-15 Identities = 327/503 (65%), Gaps = 23/503 (5%) Strand=Plus/Minus Query 4222 TACTATGATGTAAATAATTTGTATGGCGCAGCGATGAGTATGTCTTTACCAAAGGGTAAA 4281 |||| |||| ||||||| | ||||| || ||||||| | |||||| | || | Sbjct 37201 TACTTGGATGCAAATAATCTTTATGGATGGGCAATGAGTAAATATTTACCTACTGGAGAT 37142 Query 4282 TTTGAATGGGTTGAAAATGTAGAT------GATGTAGATCAGTTTTTCAATGATGATGAG 4335 || ||| | |||| ||| | || |||||| || | | |||| |||| | | Sbjct 37141 TTCAAATTGATTGATAATCTGAATAATTTTGATGTA-ATGAATATTTC--TGATARTCAC 37085 Query 4336 AGTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGA-GAATTTACATGATCTACA 4394 | ||| || || | ||||| ||| || | |||| | ||| || ||||||||||| Sbjct 37084 C-TAAAGGTTATATTTTAGAAGTTGATTTAGCTTTTCCTAAAGAACTT-CATGATCTACA 37027 Query 4395 CAAAGATCTACCTTTATGCCCAGAA---CATTTTGTACCACCTGGT-AGCAAGCAACAAA 4450 |||| | |||||| |||||| ||||||| |||| | ||| | | || Sbjct 37026 TTCAGATTTCCCTTTAGCGCCAGAAAGACATTTTGA------TGGTGAACAA-CTCCCAA 36974 Query 4451 AACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAAC 4510 || | |||||| |||| ||||| | || ||| | || || ||| ||| || ||| Sbjct 36973 AATTATTAACAACTTTGTATGATAAGAMAAAATATATAATACATTATGAAACGTTAAAAT 36914 Query 4511 AATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAAT 4570 || | | | ||||||||| | | ||||||| || ||| || ||||| |||| Sbjct 36913 TATATATTAAATTAGGTTTAAATATAGAGAAAATTCATAGAGTGTTAGAATTTAGTCAAT 36854 Query 4571 CAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATG 4630 | ||| | ||| ||||| ||| ||||| || | ||||||||||| Sbjct 36853 CTCCWTGGTTAAAAGTTTATATTGATTTCAATACTAATCTTAGATCAAAAGCTAAGAATG 36794 Query 4631 AGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGA 4690 |||| |||||| | | || ||||||||||| ||| |||| |||| || ||| || Sbjct 36793 AGTTTGAAAAAGAATATTTCAAATTAATGAACAATAGTGTTTATGGACGTACCATGATGA 36734 Query 4691 ATGTACGAAAATATAAAGATATA 4713 |||| |||| || |||||| Sbjct 36733 ATGTTAGAAATCATGTTGATATA 36711 >seq1159 Length=53490 Score = 93.3 bits (102), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 3887 AGTTTAAAATCAATACGCTTGGAGAGTACTCGGACTTATACTTAAAGACTGATGTCCTTC 3946 ||||||| || || || || || ||||| || ||||| ||| ||||| | | Sbjct 19680 AGTTTAATATAAAAACACTAGGGGAGTATAGTGATTTATATTTATTAACTGACATATTGA 19621 Query 3947 TCTTGACTGATGTCTTTGAAAACTTTAGACGTAGTTGTTTCAAGACATACAATTTAGACG 4006 | || ||||||| |||||||| |||||| || |||||| || || | |||||||||| Sbjct 19620 TTCTGGCTGATGTATTTGAAAATTTTAGAGATATTTGTTTGAAAACTTTTAATTTAGACG 19561 Query 4007 CACTACACTT-TTAT---ACAGCACCAGGTCTTTCGAACGCTGCAATGTTAAAGCATACT 4062 | | ||| |||| |||||||| ||| || | | ||||||||| | ||||| Sbjct 19560 C----CTCTTATTATTTGACAGCACCTGGTTTTGCATTTGACGCAATGTTATATTATACT 19505 Query 4063 GAAGTAGAACTTGAACTGTTAACTGATCCTGAGATGCTTCTTTTCATTGA 4112 | ||| |||||||| ||||| ||| | ||||||||| | || || Sbjct 19504 GGTGTAAAACTTGAAAGGTTAAAAGATTATTCAATGCTTCTTATGATAGA 19455 >seq3386 Length=9153 Score = 91.5 bits (100), Expect = 3e-14 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 4466 TGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTT-AGATTTA 4524 |||| || ||||| |||||||||||||| || |||| | | ||| ||| ||| | Sbjct 7573 TGTATGACAAAAACAATTATGTTATTCATTACTCAAATCTACAGCAAGCTTTGAGAGC-A 7515 Query 4525 GGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAA 4584 || ||| | || |||||| ||| | ||||||| ||||| | ||| | ||| Sbjct 7514 GGCTTAAAATTAAATTGAATACATAGAGTTATTCAATTTGATCAATCTAATTGGATGAAA 7455 Query 4585 TCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaC 4644 ||||| ||||||||||| | || | | || | ||||| ||||| |||||| Sbjct 7454 GTTTATATAGATAAAAATACAAAGTTAAGACAGATGGCAACAAATGATTTCGATAAAAAC 7395 Query 4645 TTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATG 4686 ||||||||| |||||||||| | || ||||||| || ||| Sbjct 7394 TTTTATAAAACAATGAATAATTCAGTATTTGGAAGAACAATG 7353 >seq40 Length=976373 Score = 89.7 bits (98), Expect = 1e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 7923 GTGGTAAAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAG 7982 |||||| |||| || | |||| |||| || | || || ||||| | || | || | Sbjct 711796 GTGGTACAGGTCTGCTGAACACCGTAATAAATAGTCTACCGATTGAATTACATCTGCCCG 711855 Query 7983 GTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAG 8042 |||||||||||||||| ||||| || || ||| || ||| | |||| || | ||| Sbjct 711856 GTTATCAGTACTGCGGGCCGGGAACTAATTTAAAAAAAAGACTCGCTCTCGGACAGCCAG 711915 Query 8043 GTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTAC 8089 | ||||| ||||| | ||||||| ||| ||||||||||| ||| Sbjct 711916 GAATAAACGGCTTGGATTCGGCGTGTAGGGAGCACGATATAGCCTAC 711962 >seq1332 Length=36563 Score = 87.8 bits (96), Expect = 4e-13 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 7923 GTGGTAAAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAG 7982 |||||| |||| || | |||| |||| || | || || ||||| | || | || | Sbjct 26125 GTGGTACAGGTCTGCTGAACACCGTAATAAATAGTCTACCGATTGAATTACATTTGCCCG 26066 Query 7983 GTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAG 8042 |||||||||||||||| ||| | || || ||| || ||| | |||| || | ||| Sbjct 26065 GTTATCAGTACTGCGGGCCGRGAACTAATTTAAAAAAAAGACTCGCTCTCGGGCAGCCAG 26006 Query 8043 GTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTAC 8089 | ||||| ||||| | ||||||| ||| ||||||||||| ||| Sbjct 26005 GAATAAACGGCTTGGATTCGGCGTGTAGGGAGCACGATATAGCCTAC 25959 >seq2592 Length=14104 Score = 86.0 bits (94), Expect = 1e-12 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 7981 AGGTTATCAGTACTGCGGTCCGGGTACAAAGTT-AGCCAAGAGATTAGCTCGAGGTGATT 8039 |||||||||||||||||| || |||||||| || | ||| ||||| ||| |||||| Sbjct 6467 AGGTTATCAGTACTGCGGACCAGGTACAAAATTGAATCAAC-GATTAAATCGTGGTGATA 6409 Query 8040 CAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTA 8088 |||||| || ||| | || | ||||| || ||||||||||| ||||| Sbjct 6408 AAGGTATCAACCCTCTAGATTCGGCGTGCAAAGAACACGATATCGCTTA 6360 >seq1945 Length=22256 Score = 84.2 bits (92), Expect = 4e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 7981 AGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTC 8040 ||| ||||| ||||| || || ||| |||| ||| || ||||||||||||| ||| Sbjct 18259 AGGATATCAATACTGTGGGCCTGGTGCAAATTTAAAAAAACGATTAGCTCGAGGCGATAA 18200 Query 8041 AGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTAC 8089 ||||||||| || ||||| |||| |||| || |||||||| || ||| Sbjct 18199 AGGTATAAACCCACTGGACTCTGCTTGTAGAGATCACGATATTGCGTAC 18151 >seq167 Length=540504 Score = 82.4 bits (90), Expect = 1e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 7981 AGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTC 8040 ||| ||||| ||||| || || || ||||| | | || ||||||||||||| ||| Sbjct 115663 AGGATATCAATACTGTGGGCCTGGCACAAATTAAAAAAAACGATTAGCTCGAGGCGATAA 115604 Query 8041 AGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTAC 8089 ||||||||| || ||||| |||| |||| || |||||||| || ||| Sbjct 115603 AGGTATAAACCCACTGGACTCTGCTTGTAGRGAYCACGATATTGCGTAC 115555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97967841654898