Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq476 118 1e-21 >seq476 Length=239761 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||| ||||||||||| || ||| ||| || ||||| ||||||||||| ||| Sbjct 225753 CTATACATTTCTGAATGTATATTCTCCATCATTATTTGGAATCCATAAAAACATCTAGCC 225694 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 || | |||||| || | ||||||||| | | | |||||||| || || ||||| Sbjct 225693 TCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTTTCATTAACAATGCCATCT 225634 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 || ||||||||||| |||| | || ||||| ||||| | ||| || ||| | Sbjct 225633 GAAGCAGCAAAAAATGCTAATACGTGGGATACAAAATGACGTTCATCATCAGTCAATCTA 225574 Query 21947 TTCCAATC 21954 ||||||| Sbjct 225573 ATCCAATC 225566 Score = 118 bits (130), Expect = 1e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| ||| || | ||||| ||| ||||| || |||||||||||||| || | Sbjct 226101 CTTCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCT 226042 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | |||||||||| || ||||| ||| || || || || || || || |||||||||| Sbjct 226041 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATG 225982 Query 21618 CAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677 ||||||| | |||||| | || | || |||| ||||||||| ||||| | || Sbjct 225981 CAACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTG 225922 Query 21678 CCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 |||| | ||| | ||| || || ||||| || || || Sbjct 225921 CCTTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAA 225882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 21286 ACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATAT-TGACACATTAATT 21344 |||||||| ||| | ||| | |||||| || |||||||| |||||| || | ||| || Sbjct 226376 ACAACCCAATTCAGCTAACAGTCTATCAGCAACAAATTCAATATATATGGC-CATCTTTT 226318 Query 21345 CACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAG 21404 ||||| |||| || | || | | ||||| | ||| |||||||||||| || ||| |||| Sbjct 226317 CACAACTCATGCCAACCATTCTAACAGGTAAAGCATTTGTCAAAAAATCTTGTTCAATAG 226258 Query 21405 AGACGGCTTCAACAATTATAT 21425 || |||||| |||||||| Sbjct 226257 TCACAGCTTCACAAATTATAT 226237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531863320939880