Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq476 136 5e-27 seq2933 98.7 1e-15 seq992 96.9 4e-15 seq74 89.7 6e-13 >seq476 Length=239761 Score = 136 bits (150), Expect = 5e-27 Identities = 166/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || |||||| ||| || || ||| ||| || | ||| ||||||| || | || || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 | |||||||| | ||| || |||||| || || || ||||| || |||||||| ||| Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 33448 ATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33504 | | || || ||| || || ||| ||| |||||| || |||||||||| ||| Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTGCC 225920 Query 33505 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550 |||||||||||||| ||||| ||||| ||||||||||| | | ||| Sbjct 225919 TTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAAAAGT 225874 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 33570 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33629 || ||| ||||| || || | ||||||||||| ||||| || || || || || || Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 33630 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAA 33689 ||||| || |||||||||||||| || | || |||||| | |||||||||| | | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAG 225656 Query 33690 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33749 ||||||||| || || || || || |||||||| || ||||| || || ||||| Sbjct 225655 ATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAATG 225596 Query 33750 TTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 33781 ||| || || | | || ||||||||| Sbjct 225595 ACGTTCATCATCAGTCAATCTAATCCAATCAT 225564 >seq2933 Length=10010 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 62382 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62441 ||||| ||||| | || |||||||| || | ||||||||| ||||| ||||| ||||| Sbjct 839 GTATAGGGTTCTATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATG 898 Query 62442 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 62501 ||||| | ||| || |||||||| ||||| | | ||||| ||||||| |||| Sbjct 899 GGTGCTAACAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 958 Query 62502 CAATTCCAAAGATC 62515 |||||||| | ||| Sbjct 959 CAATTCCATAAATC 972 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 ||||||| | ||||| |||||||| |||||||| || || || | ||||| |||||| Sbjct 1615 TATTGTACAACTTCAGTACAAAGATTGCTACACTTAATTGTACCAAGATTTTTTTGATTG 1674 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 || || ||||| ||||| ||||| | || | || ||||||||||||| ||||| Sbjct 1675 CTTTTAGCATTACATGCATCTTTATACAACATATACGGCATACCAGTTTCAATTTGAGA 1733 >seq992 Length=79738 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 ||||| | |||||||| | || ||||||||||||||| || ||||| ||||| ||| Sbjct 42893 TATGTTTTATATGGTCCATATTTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATAA 42952 Query 62637 TAAATGGTTTCGAAGATCTTCT-TATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 62695 ||||||||||| | || || | | || |||||| ||||| ||||||| ||||| Sbjct 42953 TAAATGGTTTC-ATGAATTTGTATGTTAAGATCTCTAGCTTCTTTAGTATCAAAAGGATA 43011 Query 62696 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAG 62745 || | |||||| || ||||||||||| | |||||| || |||| Sbjct 43012 TTTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAATAG 43061 >seq74 Length=781666 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 || || || || ||||| ||||||||||||||||| || || || | ||||| ||||| Sbjct 484407 TACTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTCTGATTG 484348 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 || || ||||| ||||| ||||| || | |||| ||||||||||||| ||||| Sbjct 484347 CTTTTGGCATTACAGGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 484289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622903305582920