Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq476 118 1e-21 seq2933 102 1e-16 seq992 102 1e-16 seq74 89.7 7e-13 >seq476 Length=239761 Score = 118 bits (130), Expect = 1e-21 Identities = 169/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 32927 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 32986 || |||||||||||| || | ||||||||||| ||||| || || || || ||||| Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 32987 AAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAA 33046 ||||| || || ||||||||||| || | || |||||| | |||||||||| | | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAG 225656 Query 33047 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33106 ||||||||| || || || || || |||||||| || ||||| || || ||||| Sbjct 225655 ATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAATG 225596 Query 33107 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATA-TCCACTT 33162 ||| || || | | || ||||||||| | ||| | | | | | ||||||| Sbjct 225595 ACGTTCATCATCAGTCAATCTAATCCAATCATCAAGATCCTAAAAAAAAGTCCACTT 225539 Score = 118 bits (130), Expect = 1e-21 Identities = 162/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || |||||| ||| | || ||| ||| || | ||| ||||||| || | || || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 | |||||||| | ||||| |||||| || || || ||||| || || ||||| ||| Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 32805 ATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 32861 | | || || ||| || || ||| ||| |||||| || |||||||||| ||| Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTGCC 225920 Query 32862 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 32907 |||||||||||||| ||||| || || || |||||||| | | ||| Sbjct 225919 TTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAAAAGT 225874 >seq2933 Length=10010 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 62237 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62296 ||||| ||||| | ||| |||||||| || | ||||||||| ||||| ||||| ||||| Sbjct 839 GTATAGGGTTCTATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATG 898 Query 62297 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 62356 ||||| | ||| || |||||||| ||||| | | ||||| ||||||| |||| Sbjct 899 GGTGCTAACAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 958 Query 62357 CAATTCCAAAGATC 62370 |||||||| | ||| Sbjct 959 CAATTCCATAAATC 972 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 ||||||| | ||||| |||||||| |||||||| || || || | ||||| |||||| Sbjct 1615 TATTGTACAACTTCAGTACAAAGATTGCTACACTTAATTGTACCAAGATTTTTTTGATTG 1674 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 || || ||||| ||||| ||||| | || | || ||||||||||||| ||||| Sbjct 1675 CTTTTAGCATTACATGCATCTTTATACAACATATACGGCATACCAGTTTCAATTTGAGA 1733 >seq992 Length=79738 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 ||||| | |||||||| | || ||||||||||||||| || ||||| ||||| ||| Sbjct 42893 TATGTTTTATATGGTCCATATTTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATAA 42952 Query 62492 TAAATGGTTTCGAAGATCTTCT-TATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATA 62550 ||||||||||| | || || | | || |||||| ||||| ||||||| ||||| Sbjct 42953 TAAATGGTTTC-ATGAATTTGTATGTTAAGATCTCTAGCTTCTTTAGTATCAAAAGGATA 43011 Query 62551 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 62600 || | |||||| |||||||||||||| | |||||| || |||| Sbjct 43012 TTTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAATAG 43061 >seq74 Length=781666 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 || || || || ||||| ||||||||||||||||| || || || | ||||| ||||| Sbjct 484407 TACTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTCTGATTG 484348 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 || || ||||| ||||| ||||| || | |||| ||||||||||||| ||||| Sbjct 484347 CTTTTGGCATTACAGGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 484289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633587352705200