Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq208 138 1e-27 seq489 96.9 3e-15 >seq208 Length=490746 Score = 138 bits (152), Expect = 1e-27 Identities = 184/253 (73%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 50985 GTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCG 51044 || |||||| | ||| || || | |||||||||||||| ||| | |||||||||| | Sbjct 174506 GTCAAACTTTCTCTTGCATCCTTCATAGTTCATATACCTAATTTTTCCAAAAATTTCTCT 174565 Query 51045 TTCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGT 51103 |||| | | |||| || || | || || |||||||||||||| || ||| || Sbjct 174566 TTCTCTCCATC-CCTGATCATGAATGCCACATATTGACCACATACACCCAACAAAACCAC 174624 Query 51104 TAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCA 51163 |||| || |||||||||| ||| || | || || ||| | || |||| | | | ||| Sbjct 174625 TAGGGTCACGACCATCCATGCTATATTTGTCATTGAGATAAATTGCATCAGCTAGTGCTC 174684 Query 51164 TGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGT 51223 | |||| | || |||||||| | || || || |||||||||||||| | | |||| | Sbjct 174685 TATCTGGAGTATCAGTCCATTCTAGTATCTTTTTTGCCCAGTACATGCGTAGGAAACCAT 174744 Query 51224 GCATCTTGCCCTC 51236 |||||||||| || Sbjct 174745 GCATCTTGCCTTC 174757 >seq489 Length=245457 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||||||||| || || || | || ||||| ||||||||| | ||||||| || Sbjct 239696 AGGTATTCCACCTGATCAGCAACGTTTGATATTTGCTGGCAAACAACTTGAAGATGGGCG 239755 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| || |||||||| |||||||||||||| || || || || || || || || || Sbjct 239756 TACTCTGTCAGATTACAACATTCAAAAAGAATCTACCCTCCACTTGGTTCTTAGACTGAG 239815 Query 25220 AGGAGG 25225 ||| || Sbjct 239816 AGGTGG 239821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433298229960155