Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq476 161 1e-34 seq465 131 2e-25 seq417 131 2e-25 >seq476 Length=239761 Score = 161 bits (178), Expect = 1e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| |||| || |||| ||||||||| || ||||| ||||| | | ||||| ||||| Sbjct 226101 CTTCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCT 226042 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | | |||||||| || ||||||||| ||||| ||||||||||||||||| || ||||||| Sbjct 226041 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATG 225982 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | || | | ||| ||||| |||| || || |||||||| | ||||||||| | Sbjct 225981 CAACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTG 225922 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || || || | ||| || | ||||| || || ||||||| Sbjct 225921 CCTTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATA 225880 Score = 147 bits (162), Expect = 2e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || |||||||| ||||| | ||||||||| ||||| | ||||||||| |||||| Sbjct 225774 ATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTGG 225715 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| || ||||||||||| || || | || |||||||||||||||| || || ||| Sbjct 225714 AATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAGA 225655 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||| || || ||||| || || |||||||| || |||| || || |||||| Sbjct 225654 TTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAATGA 225595 Query 93542 TTCTCATCATC 93552 |||||||| Sbjct 225594 CGTTCATCATC 225584 >seq465 Length=265058 Score = 131 bits (144), Expect = 2e-25 Identities = 83/89 (93%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 || ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 48600 ACCGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGA 48659 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||||| Sbjct 48660 GCGTGGGTTCGAACCCCACACCTGACAAA 48688 >seq417 Length=287960 Score = 131 bits (144), Expect = 2e-25 Identities = 86/94 (91%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 234944 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 234885 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||||||| ||| || Sbjct 234884 TGGGTTCGAACCCCACACCTGACAAAGCATTGTT 234851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556821562195880