Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq43 102 2e-16 seq197 98.7 2e-15 seq1229 87.8 4e-12 seq99 87.8 4e-12 seq44 87.8 4e-12 seq335 84.2 4e-11 >seq43 Length=940384 Score = 102 bits (112), Expect = 2e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| | ||||||||||||| | |||||||||||| Sbjct 212350 GACAGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTC 212409 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 212410 GAGCCCCACGTTGGGC 212425 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 162339 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 162280 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 162279 CCCCACGTTGGGC 162267 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 151152 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 151211 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 151212 CCCACGTTGGGC 151223 >seq197 Length=498763 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 378432 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 378491 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 378492 CCCACGTTGGGC 378503 >seq1229 Length=45773 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| | ||||||||||| | | ||||||| ||||||| Sbjct 32657 AGCCTGGCTAGCTCAGTCGGTAGAGCACAAGACTCTTAATATCGGGGTCGTGAGTTCGAG 32598 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 32597 CCCCACGTTGGGC 32585 >seq99 Length=721321 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||| |||||||||||||| | ||||||||||||| | |||||||||||||| | Sbjct 488452 GCCCGGCTAGGTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAAC 488511 Query 142564 CCCACATCGGG 142574 ||||| | ||| Sbjct 488512 CCCACGTTGGG 488522 >seq44 Length=961918 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110 ||||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| Sbjct 225062 ATGTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGA 225003 Query 142111 CCCCCGCCAGAGA 142123 |||| |||| || Sbjct 225002 TCCCCACCAGGGA 224990 >seq335 Length=371774 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 321028 GTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 320969 Query 142113 CCCGCCAGAGACGC 142126 ||| |||| || || Sbjct 320968 CCCACCAGGGATGC 320955 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 322091 GTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 322032 Query 142113 CCCGCCAGAGACGC 142126 ||| |||| || || Sbjct 322031 CCCACCAGGGATGC 322018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027762565450717