Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq308 118 2e-21 seq306 89.7 9e-13 seq197 86.0 1e-11 seq43 86.0 1e-11 >seq308 Length=372676 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||||||||| || | ||| | || ||||| | |||||| |||||||| || Sbjct 102739 TTTTGGATGTTATAATCCGACAATGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATC 102680 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | |||||| || || || || ||||| || ||||| || || || ||||| || Sbjct 102679 AAACGTTGTTGATCTGGCGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCA 102620 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 || ||||| | || || || || | |||||||| || || || |||||||| || || Sbjct 102619 ATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAA 102560 Query 68454 ATCTGCAT 68461 || ||||| Sbjct 102559 ATTTGCAT 102552 >seq306 Length=365715 Score = 89.7 bits (98), Expect = 9e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||| ||||| || || ||||||||||| || || || || |||||||| | |||||||| Sbjct 85341 TACTAAGTGAAGTGTAGACTCTTTTTGTATATTGTAGTCAGAGAGTGTGCGACCATCTTC 85400 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 || ||||| || || || || || | |||||| || || ||||||||| Sbjct 85401 CAATTGCTTGCCAGCAAAAATAAGACGTTGTTGATCCGGGGGAATGCCT 85449 >seq197 Length=498763 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 378432 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 378491 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 378492 CCCACGTTGGGC 378503 >seq43 Length=940384 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 151152 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 151211 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 151212 CCCACGTTGGGC 151223 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 162338 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 162279 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 162278 CCCACGTTGGGC 162267 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 212354 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 212413 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 212414 CCCACGTTGGGC 212425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921557460181640