Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2424 105 7e-18 seq284 105 7e-18 seq265 104 3e-17 seq210 102 9e-17 seq230 100 3e-16 seq89 100 3e-16 seq708 95.1 1e-14 seq932 89.7 6e-13 seq622 84.2 2e-11 seq466 82.4 8e-11 >seq2424 Length=14082 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||||| |||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 7289 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7230 Query 57056 ACTCACCACTATACTACCGAGGATT 57080 ||| ||||||||||||||||||||| Sbjct 7229 ACTTACCACTATACTACCGAGGATT 7205 >seq284 Length=402928 Score = 105 bits (116), Expect = 7e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 378818 TTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 378877 Query 57064 CTATACTACCGAGGATTG 57081 |||||||||||||||||| Sbjct 378878 CTATACTACCGAGGATTG 378895 Score = 104 bits (114), Expect = 3e-17 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||||| |||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 347506 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 347447 Query 57056 ACTCACCACTATACTACCGAGGATTG 57081 ||| ||||||||||||||||||| || Sbjct 347446 ACTTACCACTATACTACCGAGGACTG 347421 >seq265 Length=408381 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 167301 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 167242 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 167241 CTTACCACTATACTACCGAGGA 167220 >seq210 Length=519240 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||| || || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 439699 AAAAWTTYTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 439758 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || ||||||||||||||||||||| Sbjct 439759 CTTACCACTATACTACCGAGGATT 439782 >seq230 Length=456428 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||| ||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 144850 AAAAGTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 144909 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 144910 CTTACCACTATACTACCGAGGA 144931 >seq89 Length=772902 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||||| |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 599996 AAAATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 600055 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 600056 TACCACTATACTACCGAGGA 600075 >seq708 Length=148384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 79904 AAATTGGCTCGCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 79845 Query 57060 ACCACTATACTACCGAGGATTG 57081 | |||||||||||||||||||| Sbjct 79844 ATCACTATACTACCGAGGATTG 79823 >seq932 Length=98639 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||||| |||| |||| | ||||||| || |||| |||||||||||||||| ||||| Sbjct 72952 AAATTGGCTCCCCGGCGGGGAATCGAAACCCGGTCACCCGCGTGACAGGCGGGGATACTT 72893 Query 57060 ACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 72892 ACCACTATACTACCGAGGA 72874 >seq622 Length=179467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||||| |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 114755 AAAATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 114814 Query 57059 CACCACTATACTAC 57072 || |||||||||| Sbjct 114815 TACAACTATACTAC 114828 >seq466 Length=244755 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 57000 AAATTTT-CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||||| |||| |||| | ||||||||| ||||||||||| |||||||| ||||| Sbjct 141216 AAATTTGGCTCCCCGGCGGGGAATCGAACCTCGGTCTCCCGCGCTACAGGCGGGGATACT 141275 Query 57059 CACCACTATACTACCGAGGATT 57080 ||||||||||||| ||||||| Sbjct 141276 TACCACTATACTACTGAGGATT 141297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543174523868080