Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq476 167 3e-36 seq992 111 2e-19 seq2933 105 8e-18 seq74 105 8e-18 >seq476 Length=239761 Score = 167 bits (184), Expect = 3e-36 Identities = 169/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || |||||| |||| ||||| ||| ||||| || ||||| | ||||||||| || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 ||||| |||| | |||||| |||||| || ||||||||||| || || ||||| ||| Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164 |||| ||||| ||| || | || | ||| | |||||||| || |||||||| ||| Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTGCC 225920 Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||||||||||||||||||| || || || | |||||||| Sbjct 225919 TTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATA 225880 Score = 154 bits (170), Expect = 2e-32 Identities = 177/237 (75%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 19230 AACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTG 19289 || ||||| ||| || ||||| || |||||||||||||| ||||| || || || || Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 19290 AAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAA 19349 ||||| ||||||||||| || || |||| || ||||| | |||||| ||| || | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAG 225656 Query 19350 ATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATG 19409 |||||||||||| || ||||| ||| ||||||||||||||||| || | |||||| Sbjct 225655 ATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAATG 225596 Query 19410 TTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAA-TCTACTT 19465 |||||| || ||| || ||||||||| || ||| | | | ||| || |||| Sbjct 225595 ACGTTCATCATCAGTCAATCTAATCCAATCATCAAGATCCTAAAAAAAAGTCCACTT 225539 >seq992 Length=79738 Score = 111 bits (122), Expect = 2e-19 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 47565 TATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAA 47624 ||||||||||| || || ||| |||| ||||||||||||||||| || |||| |||| Sbjct 42893 TATGTTTTATATGGTCCATATTTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATAA 42952 Query 47625 TATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATAN 47684 || || |||||| |||| |||||| |||| || |||||| | ||||||||||| Sbjct 42953 TAAATGGTTTCATGAATTTGTATGTTAAGATCTCTAGCTTCTTTAGTATCAAAAGGATAT 43012 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAAT 47731 ||| |||||| |||||||| | |||||| ||||| Sbjct 43013 TTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAAT 43059 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/153 (75%), Gaps = 9/153 (6%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||||||| ||| |||||||||||||||| ||||||||| |||||| || ||||| || Sbjct 53942 TCATAAATTCATCAGGTATCCAAAGAGCTAAAAATAAATCTCTAGTTTTTTCTTCTTTAT 53883 Query 48271 TGCCACTATTCCTTTTAAGT---TCAAGA-AAGTCCATTATATCAGCATGCCATGGTTCT 48326 ||||| ||| ||||| || || | |||| | ||||||||||||||| || || Sbjct 53882 TGCCAGTAT---TTTTACGTAACTCTGTATAAGTATA-TATATCAGCATGCCAAGGCTCA 53827 Query 48327 AAATATATTGCCATTACACCTGGTCGTTTATTA 48359 | || | || | | | ||||||| | ||||| Sbjct 53826 ATGTAAACAGCAACTGCCCCTGGTC-TCTATTA 53795 >seq2933 Length=10010 Score = 105 bits (116), Expect = 8e-18 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 ||||| ||| || || || || | ||| | | ||||| || ||| || ||| | ||| Sbjct 1074 TCCTTGACTGATTGGTGATCCTTGATACGATGAATAAGTTCCATATTTTTCAGCTAATTC 1133 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 |||||| ||||| || |||| |||||| | ||||||||||||| || || || || | Sbjct 1134 ACAACTAGCTTCTAACGCACCATAATACAAAGTTTCAAATATTTGTAAATTAAGCTTTCG 1193 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 || ||| | ||| |||| ||| | ||| ||||||||| ||||| | Sbjct 1194 TGATTCAGGTGAGCCAAATGGAAATCGCATAATTGAGAATAAATCTGCCAACCCTTGGAT 1253 Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGC 47761 |||||| ||||| || | ||| |||||||||| ||||| Sbjct 1254 ACCAATTCCAATAGGACGATGTCGTTTATTAGAAGTTTCAGC 1295 Score = 102 bits (112), Expect = 9e-17 Identities = 107/138 (78%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 47330 AAATTCTCCAG--ATAGTAC-TCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 |||||||||| | ||||| ||| | ||||| ||| ||||||| ||||||||||| Sbjct 799 AAATTCTCCACTAAGAGTACGTCT---GTAATATAAATTTGTTGTATAGGGTTCTATAGA 855 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 ||||||||| |||| ||||||||| ||||| || |||||||||| ||| | || || Sbjct 856 TTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATGGGTGCTAACAACAATGA 915 Query 47447 ATTTCTTACTCCATATTT 47464 |||||| || || | ||| Sbjct 916 ATTTCTAACACCGTGTTT 933 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/184 (71%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||||||||||||||| | | | || |||| | | | |||| ||| ||||||| Sbjct 378 TCCATCCATAGAAATGAACAGATGATATTTTACTAATAGTTGGTTGCTCAATGTGAATAT 437 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | || ||| |||||||| |||| ||| ||| || |||||||||||||| | Sbjct 438 TTAATGACTGAGATTGATCAATGTATGCTGCTCGATCTGCAGCCATATCTAAAATGATTT 497 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGA-TTAGTA 47228 |||| | || ||||| ||||||||| | || |||||| | ||||| | | || || Sbjct 498 TTTGAGATAGTTCCCAATTTGTTTTATACAGTTCTTTAATATTGTCTGGAATACTTTCTA 557 Query 47229 TTTT 47232 |||| Sbjct 558 TTTT 561 >seq74 Length=781666 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 ||||| ||| | ||||||||||| ||||||||||||||||||| |||||| || ||||| Sbjct 485175 ATATAAATTTGTAGTATATGGTTCAATAGATTCATTATTTCCAAGAATTTGTGCTGTTGA 485116 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTT 47464 || |||||||| | ||| | ||| || |||||| ||||||| ||| Sbjct 485115 AGCGGTAGGCATCGGTGCTAATAACAATGAATTTCTAACTCCATGTTT 485068 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 ||||| ||| || || || || | ||| | | ||||| || ||| || ||| | || Sbjct 484929 TCCTTGACTAATTGGTGATCCTTGATAAGATGAATAAGTCCCATATTTTTCAGCTAACTC 484870 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 |||||| ||||| ||||| | |||||||| ||||||||||||| || ||||| || | Sbjct 484869 ACAACTAGCTTCTAATGCGCCATAATATAAAGTTTCAAATATTTGTAAATTTAGCTTTCG 484810 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 | ||| | || |||| ||| | ||| ||||||||| ||||| || Sbjct 484809 AGATTCGGGAGAGCCAAATGGAAATCGCATCAATAAAAATAAATCTGCCAAACCTTGTAC 484750 Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGC 47761 |||||| || | || | ||| |||||| ||| ||||| Sbjct 484749 ACCAATCCCGACAGGGCGATGCCGTTTATTTGAAGTTTCAGC 484708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562069192408680