Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq306 114 1e-20 seq208 109 4e-19 seq308 107 2e-18 seq489 89.7 4e-13 >seq306 Length=365715 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||||||| | ||||| ||||| ||||| ||||||||||||||||| || | | Sbjct 85324 CCACCTCTTAAACGAAGTACTAAGTGAAGTGTAGACTCTTTTTGTATATTGTAGTCAGAG 85383 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||||||||| || ||||| || | ||| |||||||| || ||| Sbjct 85384 AGTGTGCGACCATCTTCCAATTGCTTGCCAGCAAAAATAAGACGTTGTTGATCCGGGGGA 85443 Query 101363 ATGCCT 101368 |||||| Sbjct 85444 ATGCCT 85449 >seq208 Length=490746 Score = 109 bits (120), Expect = 4e-19 Identities = 233/343 (68%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 13637 ATGTAACAATCTATATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTA 13696 ||| || || ||| | || |||| || || |||||| | ||||| | | ||||| Sbjct 174492 ATGAAAGCATTTATGTCAAACTTTCTCTTGCATCCTTCATAGTTCATATACCTAATTTTT 174551 Query 13697 CCATAGATTGGTCGCTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAA 13756 ||| | ||| || || |||| | |||| ||| | || |||||||||||||| || Sbjct 174552 CCAAAAATTTCTCTTTCTCTCCATCCCTGATCATGAATGCCACATATTGACCACATACAC 174611 Query 13757 CCGGCATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCG 13816 || || |||| | || || || ||||||| || |||||||| |||| ||| || || Sbjct 174612 CCAACAAAACCACTAGGGTCACGACCATCCATGCTATATTTGTCATTGAGATAAATTGCA 174671 Query 13817 TTGATTAAAGCCACTGT-AGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATAT 13875 | || | | || | || | | || |||||||| ||| ||||| ||||| || || Sbjct 174672 TCAGCTAGTG-CTCTATCTGGAGTATCAGTCCATTCTAGTATCTTTTTTGCCCAGTACAT 174730 Query 13876 TCTCATATATCCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAA 13935 | | | || ||||| ||||||| | || | |||| | || |||| ||||| || Sbjct 174731 GCGTAGGAAACCATGCATCTTGCCTTCCTTTACCAACTGTATTTGTGCAGAATTCCA-AA 174789 Query 13936 TAT-GTCATGAGTTTCGGAATTTTCTAATTCTCTTCTATTGTA 13977 || |||||| || ||| |||||| ||| |||| |||| Sbjct 174790 GATCGTCATGTGTGCGTGAACCTTCTAACTCTTCTCTAGTGTA 174832 >seq308 Length=372676 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||||| || || || |||||||| |||||||| ||||| || |||||||||||||| ||| Sbjct 102697 TGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGCGGGATACCTTCTTTATCTTGGATT 102638 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || ||| ||| |||| | |||||| || | || || || ||||||| || || || Sbjct 102637 TTGGCTTTGACATTTTCAATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTCCCT 102578 Query 101444 GTTAAAGTTTTTACAAATATCTGCATG 101470 || | || || ||||| || |||||| Sbjct 102577 GTAAGGGTCTTCACAAAAATTTGCATG 102551 >seq489 Length=245457 Score = 89.7 bits (98), Expect = 4e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || || ||||||||||||||||| || |||||||| | | ||| | |||| || Sbjct 239804 AACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGACAGAGTACGCCCATCTTC 239745 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368 | ||| || || |||||||||||||| || ||||| || ||||| ||| Sbjct 239744 AAGTTGTTTGCCAGCAAATATCAAACGTTGCTGATCAGGTGGAATACCT 239696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396251175302409