Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq308 129 1e-24 seq1015 116 7e-21 seq1214 114 2e-20 seq306 107 3e-18 seq489 87.8 3e-12 >seq308 Length=372676 Score = 129 bits (142), Expect = 1e-24 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||| || || || | |||||||| || || || |||||||||||||| ||| Sbjct 102697 TGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGCGGGATACCTTCTTTATCTTGGATT 102638 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | |||| |||||| |||||||||||||| || ||||| || || || ||| Sbjct 102637 TTGGCTTTGACATTTTCAATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTCCCT 102578 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || ||||| |||||||| || Sbjct 102577 GTAAGGGTCTTCACAAAAATTTGCATGTT 102549 >seq1015 Length=63577 Score = 116 bits (128), Expect = 7e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 155701 ATAATAATGATTATGATTTTAAATTAGGTAATTGGTTCAAAGACATTTGGTATCCGTTAT 155760 || |||| | ||| |||| || ||||||||||||||||||| ||||||| ||| |||| Sbjct 50072 ATGATAAAAAATATAATTTAAATGTAGGTAATTGGTTCAAAGATATTTGGTTTCCATTAT 50013 Query 155761 TCGAAGAAAAAGATATATTAATAACTAACGAAATTTTAACATTTATA 155807 | ||||||||| ||||||||||||||| || |||||||| |||||| Sbjct 50012 TTGAAGAAAAAAATATATTAATAACTAGTGACATTTTAACCTTTATA 49966 Score = 100 bits (110), Expect = 5e-16 Identities = 121/160 (76%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 134615 AATTTAAAT-TGGGTGATTGGTTTATCGACATATGGTATCCATTATTTAATCAGAAAGAT 134673 ||||||||| | ||| ||||||| | || || |||| |||||||||| | | ||| || Sbjct 50058 AATTTAAATGTAGGTAATTGGTTCAAAGATATTTGGTTTCCATTATTTGAAGAAAAAAAT 49999 Query 134674 ATATTAATTACTAACGAAATATTAAAATTTATACACTATAGTAT---AGGGTCTACAATC 134730 |||||||| |||| || || |||| |||||||||||| |||| ||||| || Sbjct 49998 ATATTAATAACTAGTGACATTTTAACCTTTATACACTATGGTATTTCAGGGTGTATGGAA 49939 Query 134731 GTAGACCCTAA-AATATTAAAACAACATAAAGGTAATTTA 134769 || ||||||| ||||||||| | ||||||| |||||| Sbjct 49938 ATACACCCTAATGATATTAAAA-ATAATAAAGGAAATTTA 49900 >seq1214 Length=47825 Score = 114 bits (126), Expect = 2e-20 Identities = 157/213 (74%), Gaps = 15/213 (7%) Strand=Plus/Minus Query 155701 ATAATAATGATTATGATTTTAAATTAGGTAAT---TGGTTCAAAGACATTTGGTATCCGT 155757 || |||| | |||||||| || |||||||| ||||||||||| ||||||| ||| | Sbjct 38955 ATGATAAAAAATATGATTTAAATGTAGGTAATAGGTGGTTCAAAGATATTTGGTTTCCAT 38896 Query 155758 TATTCGAAGAAAAAGATATATTAATAACTAACGAAATTTTAACATTTATA---TATCATT 155814 |||| ||||||||| ||||||||||||||| || |||||||| |||||| ||| || Sbjct 38895 TATTTGAAGAAAAA-ATATATTAATAACTAGTGACATTTTAACCTTTATACACTATGATA 38837 Query 155815 TTCCAggggg--gggCCAGCCCCCCTCTGAATCTTTCAAAGGTTTTAAGAAAAATTTAAT 155872 || ||||| | ||| | |||| || || ||| | ||| ||||||||| Sbjct 38836 TTTCAGGGTGTATTTCCATACACCCTAAAGATATTGAAAA--TAATAAAGGAAATTTAAT 38779 Query 155873 --AGATTCTT--TAAATAATTATAATATAAAAT 155901 | |||||| || ||||||||||||| ||| Sbjct 38778 TAAAATTCTTGATACCTAATTATAATATAGAAT 38746 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/167 (74%), Gaps = 11/167 (7%) Strand=Plus/Minus Query 134611 TATGAATTTAAAT-TGGGTGAT---TGGTTTATCGACATATGGTATCCATTATTTAATCA 134666 ||||| ||||||| | ||| || ||||| | || || |||| |||||||||| | | Sbjct 38944 TATGA-TTTAAATGTAGGTAATAGGTGGTTCAAAGATATTTGGTTTCCATTATTTGAAGA 38886 Query 134667 GAAAGATATATTAATTACTAACGAAATATTAAAATTTATACACTATAGTAT---AGGGTC 134723 ||| |||||||||| |||| || || |||| |||||||||||| ||| ||||| Sbjct 38885 AAAA-ATATATTAATAACTAGTGACATTTTAACCTTTATACACTATGATATTTCAGGGTG 38827 Query 134724 TACAATCGTAGACCCTAAA-ATATTAAAACAACATAAAGGTAATTTA 134769 || | || |||||||| ||||| ||| | ||||||| |||||| Sbjct 38826 TATTTCCATACACCCTAAAGATATTGAAA-ATAATAAAGGAAATTTA 38781 >seq306 Length=365715 Score = 107 bits (118), Expect = 3e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||||||||| ||||| | ||||| |||| ||| | ||| || |||||||| || Sbjct 86695 CCTTCTTTATCTTGAATTTTCGATTTTACATTTTCAATTGAATCTGATGACTCAACCTCA 86754 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| |||||||| || || ||||| ||||| |||||||| || Sbjct 86755 AGAGTTATTGTTTTACCCGTAAGGGTTTTAACAAAAATTTGCATCTT 86801 >seq489 Length=245457 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/131 (76%), Gaps = 5/131 (4%) Strand=Plus/Minus Query 193252 GTATT--CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||||| |||||||||||||| ||||| | ||| | |||| ||| | ||| || ||||| Sbjct 237629 GTATTTACCTTCTTTATCTTGAATTTTAGATTTCACATTTTCAATTGAATCCGACGACTC 237570 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369 ||||| ||||| || ||||| || || | ||| || || || || |||||||| || Sbjct 237569 TACTTCGAGAGTGATCGTTTTCCCAGTCAACGTCTTCACGAAGATCTGCATTTTGCTA-- 237512 Query 193370 AAAAT-AATTA 193379 ||||| ||||| Sbjct 237511 AAAATCAATTA 237501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899591008101840