Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1015 109 8e-19 seq1214 102 1e-16 seq308 96.9 5e-15 >seq1015 Length=63577 Score = 109 bits (120), Expect = 8e-19 Identities = 144/193 (75%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 116372 ATTATAATAACTATGATTTAAAACTCGGAAGCTGGTTTAAAGATATATGGTTTCCATTGT 116431 || |||| || ||| ||||||| | || | ||||| |||||||| ||||||||||| | Sbjct 50072 ATGATAAAAAATATAATTTAAATGTAGGTAATTGGTTCAAAGATATTTGGTTTCCATTAT 50013 Query 116432 TTGAACATAAAGATATGTTGATAACTAATGATATTTTATGCTTTATTCATTACGGAATTT 116491 ||||| | ||| |||| || ||||||| ||| |||||| |||||| || || || |||| Sbjct 50012 TTGAAGAAAAAAATATATTAATAACTAGTGACATTTTAACCTTTATACACTATGGTATTT 49953 Query 116492 CAGGGGG--CGGAAAGCCGCCCT-CTGTAAATATTAAACA-AATTATGAAACATTTACT- 116546 ||||| | ||||| | |||| || |||||||| | ||| | | || ||||| | Sbjct 49952 CAGGGTGTATGGAAATACACCCTAATG---ATATTAAAAATAATAAAGGAA-ATTTAATT 49897 Query 116547 -AGATTCAATAAA 116558 | |||| ||||| Sbjct 49896 AAAATTCTATAAA 49884 Score = 100 bits (110), Expect = 4e-16 Identities = 110/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 118547 TAGATAATAATGATTATGATTTAAAACTCGGAAGCTGGTTTAAAGATATATGGTTTCCAT 118606 || || |||| | ||| ||||||| | || | ||||| |||||||| |||||||||| Sbjct 50075 TAAATGATAAAAAATATAATTTAAATGTAGGTAATTGGTTCAAAGATATTTGGTTTCCAT 50016 Query 118607 TGTTTGAACAGAAAGATGTTTTAATTACTAATGATATATTGAATTTTATTCATTATGGAA 118666 | |||||| | ||| || | ||||| |||| ||| || || | ||||| || ||||| | Sbjct 50015 TATTTGAAGAAAAAAATATATTAATAACTAGTGACATTTTAACCTTTATACACTATGGTA 49956 Query 118667 ---CAGGGTGTACGGCCATACACCCT 118689 ||||||||| || ||||||||| Sbjct 49955 TTTCAGGGTGTATGGAAATACACCCT 49930 >seq1214 Length=47825 Score = 102 bits (112), Expect = 1e-16 Identities = 78/91 (86%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 114897 ATATTTTCTAGATATTTGGATTCCATTAAAAGATAAAAAAGAAATATTAATAACAGATAA 114956 ||||||| |||| | |||||||||||| | ||||||||||||||||||| || || || Sbjct 38543 ATATTTT-TAGAATTGTGGATTCCATTATATAATAAAAAAGAAATATTAATTACTGAAAA 38601 Query 114957 TTTATTAGAATTTATGGGTTTTATAAATGAT 114987 |||||||||||||||||| ||| ||||| || Sbjct 38602 TTTATTAGAATTTATGGGATTTTTAAATAAT 38632 Score = 100 bits (110), Expect = 4e-16 Identities = 100/128 (78%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 116372 ATTATAATAACTATGATTTAAAACTCGGAA---GCTGGTTTAAAGATATATGGTTTCCAT 116428 || |||| || ||||||||||| | || | | ||||| |||||||| |||||||||| Sbjct 38955 ATGATAAAAAATATGATTTAAATGTAGGTAATAGGTGGTTCAAAGATATTTGGTTTCCAT 38896 Query 116429 TGTTTGAACATAAAGATATGTTGATAACTAATGATATTTTATGCTTTATTCATTACGGAA 116488 | |||||| | ||| |||| || ||||||| ||| |||||| |||||| || || | | Sbjct 38895 TATTTGAAGA-AAAAATATATTAATAACTAGTGACATTTTAACCTTTATACACTATGATA 38837 Query 116489 TTTCAGGG 116496 |||||||| Sbjct 38836 TTTCAGGG 38829 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 7/149 (5%) Strand=Plus/Minus Query 118550 ATAATAATGATTATGATTTAAAACTCGGAA---GCTGGTTTAAAGATATATGGTTTCCAT 118606 || |||| | ||||||||||| | || | | ||||| |||||||| |||||||||| Sbjct 38955 ATGATAAAAAATATGATTTAAATGTAGGTAATAGGTGGTTCAAAGATATTTGGTTTCCAT 38896 Query 118607 TGTTTGAACAGAAAGATGTTTTAATTACTAATGATATATTGAATTTTATTCATTATGGAA 118666 | |||||| | ||| || | ||||| |||| ||| || || | ||||| || |||| | Sbjct 38895 TATTTGAAGA-AAAAATATATTAATAACTAGTGACATTTTAACCTTTATACACTATGATA 38837 Query 118667 ---CAGGGTGTACGGCCATACACCCTGAA 118692 ||||||||| ||||||||||| || Sbjct 38836 TTTCAGGGTGTATTTCCATACACCCTAAA 38808 >seq308 Length=372676 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| | || || | || || || || || || | || || || | Sbjct 102549 AACATGCAAATTTTTGTGAAGACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAGTCT 102608 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| ||| || ||| ||||| |||||||||||||| || || ||||| Sbjct 102609 TCCGACACTATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCGCCAGAT 102668 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||| | ||||| |||||||| ||||| | || || || |||||| Sbjct 102669 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGTACATTGTCGGATTAT 102728 Query 156000 AATATATCCAAAGAGGCGACGC-TTCATT 156027 | | ||||||| ||| | || |||||| Sbjct 102729 A--ACATCCAAA-AGGGTATGCTTTCATT 102754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731820430469200