Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq476 156 8e-33 seq1214 114 3e-20 seq1015 105 1e-17 seq308 102 2e-16 seq489 96.9 7e-15 seq1164 95.1 2e-14 seq1306 89.7 1e-12 seq306 86.0 1e-11 >seq476 Length=239761 Score = 156 bits (172), Expect = 8e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 49848 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 49907 || || ||||| || | ||||| ||||||||||||||||||||||||||||| || || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 49908 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCT 49967 | |||||||| || |||||||| | ||| || |||||||| || ||| |||||||| Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 49968 ATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCt 50027 | || ||| | ||||| || ||| ||| |||||| || | |||||||||||| Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTGCC 225920 Query 50028 ttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 || ||||| | | | || || |||| || || |||||||| Sbjct 225919 TTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAA 225879 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 |||||||| ||||||||| ||||||| | ||||| |||||| ||| |||||| Sbjct 225762 ATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTGGAATCCATAAAAA 225703 Query 50166 TGTCTTGCTTCTGAATACT-GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATAC 50224 ||| || || | |||| ||||||| | | ||||||||||| | ||| ||| || Sbjct 225702 CATCTAGCCTCAGT-TACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTTTCATTAAC 225644 Query 50225 AATACCATCAGATGCTGCGAAGAATGCTAAAACGT 50259 ||| ||||| || || || || |||||||| |||| Sbjct 225643 AATGCCATCTGAAGCAGCAAAAAATGCTAATACGT 225609 >seq1214 Length=47825 Score = 114 bits (126), Expect = 3e-20 Identities = 112/143 (78%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 62102 TTGACGCGTCCCAGATTTTGGGACGCGTCAGATTATCAATAAAACCCATAAACTCTAATA 62161 || |||||||| | || |||||||| | |||| | ||| |||||||| ||||||| Sbjct 38661 TTAACGCGTCCGGAAATTCCGGACGCGTTA--TTATTTAAAAATCCCATAAATTCTAATA 38604 Query 62162 TATTTTCAGTGATTAATATTTCTTTTTTATCGTTTAAAGAAGTCCATAATTCTAAAAATA 62221 ||||||||| ||||||||||||||||||| | ||| | | |||| ||||||||||||| Sbjct 38603 AATTTTCAGTAATTAATATTTCTTTTTTATTATATAATGGAATCCACAATTCTAAAAATA 38544 Query 62222 TTTTATCATTTGATAATTTTATA 62244 |||||||| |||| |||| Sbjct 38543 ---TATCATTTTTAAATTATATA 38524 Score = 105 bits (116), Expect = 1e-17 Identities = 91/112 (81%), Gaps = 3/112 (3%) Strand=Plus/Minus Query 60656 ATTATCAATAAAACCCATAAACTCTAATATATTTTCAGTGATTAATATTTCTTTTTTATT 60715 ||||| | ||| |||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct 38632 ATTATTTAAAAATCCCATAAATTCTAATAAATTTTCAGTAATTAATATTTCTTTTTTATT 38573 Query 60716 GTTTAAAGAGGTCCATAATTCTAAAAATATTTTATCATTTGATAATTTTATA 60767 | ||| | |||| ||||||||||||| |||||||| |||| |||| Sbjct 38572 ATATAATGGAATCCACAATTCTAAAAATA---TATCATTTTTAAATTATATA 38524 Score = 104 bits (114), Expect = 5e-17 Identities = 139/185 (75%), Gaps = 14/185 (8%) Strand=Plus/Plus Query 296892 ATTTAATATTAACAAATAATCAATATTTTATTGATATGTGGTTACCTTTAAAAGATAAAA 296951 || |||| |||| |||| || ||||||| | || ||||| | || ||| | |||||| Sbjct 38525 ATATAAT-TTAA-AAATGAT--ATATTTT-TAGAATTGTGGATTCCATTATATAATAAAA 38579 Query 296952 AAGATATATTAATAACTAATAATTTATTAGAATTTATGGGATTTGGAGATATAAATAACG 297011 |||| |||||||| ||| | |||||||||||||||||||||||| | || ||||||| Sbjct 38580 AAGAAATATTAATTACTGAAAATTTATTAGAATTTATGGGATTTTTAAAT---AATAACG 38636 Query 297012 CGGTCGCCAATTCCGACCACGTTAAATTAAGAA--ATATTCGTAAGCATTTTATTGAATT 297069 || || | ||||| | |||||||| |||| | || | || ||||||| ||| | Sbjct 38637 CGTCCGGAATTTCCGGACGCGTTAAATATAGAAAGAAATGCATA---ATTTTATAGAA-T 38692 Query 297070 TATAA 297074 ||||| Sbjct 38693 TATAA 38697 Score = 104 bits (114), Expect = 5e-17 Identities = 139/185 (75%), Gaps = 14/185 (8%) Strand=Plus/Minus Query 10618 TTATAAATTCAATAAAATGCTTACGAATAT--TTCTTAATTTAACGTGGTCGGAATTGGC 10675 |||||| ||| ||||||| || | || | |||| |||||||| | ||||| | | Sbjct 38697 TTATAA-TTCTATAAAAT---TATGCATTTCTTTCTATATTTAACGCGTCCGGAAATTCC 38642 Query 10676 GACCGCGTTATTTATATCTCCAAATCCCATAAATTCTAATAAATTATTAGTTATTAATAT 10735 | ||||||||| || | |||||||||||||||||||||||| | ||| |||||||| Sbjct 38641 GGACGCGTTATT---ATTTAAAAATCCCATAAATTCTAATAAATTTTCAGTAATTAATAT 38585 Query 10736 ATCTTTTTTATCTTTTAAAGGTAACCACATATCAATAAAATATTGATTATTTGTTAATAT 10795 |||||||||| | ||| || | ||||| || | ||||||| || |||| |||| || Sbjct 38584 TTCTTTTTTATTATATAATGGAATCCACAATTCTA-AAAATAT--ATCATTT-TTAA-AT 38530 Query 10796 TAAAT 10800 || || Sbjct 38529 TATAT 38525 Score = 100 bits (110), Expect = 6e-16 Identities = 97/120 (81%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 222205 TAAAAT-ATAATGATTATAATATTAATTTAGG--ATCG-TGGTTTAAAGATATATGGTAT 222260 |||||| |||| | ||| || | ||| |||| || | ||||| |||||||| |||| | Sbjct 38959 TAAAATGATAAAAAATATGATTTAAATGTAGGTAATAGGTGGTTCAAAGATATTTGGTTT 38900 Query 222261 CCACTATTTGAAGAGAAAGATATATTAATAACTAATGATATTTTATCATTTATATACTAT 222320 ||| |||||||||| ||| ||||||||||||||| ||| |||||| | |||||| ||||| Sbjct 38899 CCATTATTTGAAGAAAAA-ATATATTAATAACTAGTGACATTTTAACCTTTATACACTAT 38841 Score = 93.3 bits (102), Expect = 8e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 220150 TATTTTTAGAATTATGGTCTTCGTTAAATGATAAAAAAGAAATAATAATCACCGAAAATA 220209 ||||||||||||| ||| | | ||| || |||||||||||||| |||| || |||||| Sbjct 38544 TATTTTTAGAATTGTGGATTCCATTATATAATAAAAAAGAAATATTAATTACTGAAAATT 38603 Query 220210 TATTAGAATTTATGGGTTTTATCGATAAT 220238 |||||||||||||||| ||| | ||||| Sbjct 38604 TATTAGAATTTATGGGATTTTTAAATAAT 38632 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 230999 CCCTGAAATACCGTAATGTATAAAATATAATATTTTATTAGTTATAATTATATCTTTCTG 231058 |||||||||| | || |||||||| ||| || | | ||||||| | ||||| ||| | Sbjct 38829 CCCTGAAATATCATAGTGTATAAAGGTTAAAATGTCACTAGTTATTAATATATTTTT-TC 38887 Query 231059 TTCTAATAGCGGATACCAAATATCTTTGAACCA---ATCACCTAATTTAAAATCAT 231111 ||| |||| ||| ||||||||||||||||||| || ||||| || ||||||| Sbjct 38888 TTCAAATAATGGAAACCAAATATCTTTGAACCACCTATTACCTACATTTAAATCAT 38943 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/116 (78%), Gaps = 8/116 (7%) Strand=Plus/Plus Query 232478 CCCTGAAA-ATTATA---TATAAAATTAAAAATTTCATTAGTTATAATTATATCTTTCTT 232533 |||||||| || ||| |||||| | ||||| ||| ||||||| | ||||| ||| | Sbjct 38829 CCCTGAAATATCATAGTGTATAAAGGTTAAAATGTCACTAGTTATTAATATATTTTTTCT 38888 Query 232534 CTCAAATAACGGATACCAAATATCTTTGAACCA---ATCACCTAATTTAAAATCAT 232586 |||||||| ||| ||||||||||||||||||| || ||||| || ||||||| Sbjct 38889 -TCAAATAATGGAAACCAAATATCTTTGAACCACCTATTACCTACATTTAAATCAT 38943 >seq1015 Length=63577 Score = 105 bits (116), Expect = 1e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 222205 TAAAATATAATGATTATAATATTAATTTAGGATCGTGGTTTAAAGATATATGGTATCCAC 222264 |||| |||| | |||||| | ||| |||| ||||| |||||||| |||| |||| Sbjct 50075 TAAATGATAAAAAATATAATTTAAATGTAGGTAATTGGTTCAAAGATATTTGGTTTCCAT 50016 Query 222265 TATTTGAAGAGAAAGATATATTAATAACTAATGATATTTTATCATTTATATACTAT 222320 |||||||||| ||| ||||||||||||||| ||| |||||| | |||||| ||||| Sbjct 50015 TATTTGAAGAAAAAAATATATTAATAACTAGTGACATTTTAACCTTTATACACTAT 49960 Score = 104 bits (114), Expect = 5e-17 Identities = 89/109 (82%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 230999 CCCTGAAATACCGTAATGTATAAAATATAATATTTTATTAGTTATAATTATATCTTTCTG 231058 |||||||||||| || |||||||| ||| || | | ||||||| | ||||| ||| | Sbjct 49948 CCCTGAAATACCATAGTGTATAAAGGTTAAAATGTCACTAGTTATTAATATATTTTTTTC 50007 Query 231059 TTCTAATAGCGGATACCAAATATCTTTGAACCAATCACCTA-ATTTAAA 231106 ||| |||| ||| ||||||||||||||||||||| ||||| ||||||| Sbjct 50008 TTCAAATAATGGAAACCAAATATCTTTGAACCAATTACCTACATTTAAA 50056 Score = 93.3 bits (102), Expect = 8e-14 Identities = 76/91 (84%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 232492 TATAAAATTAAAAATTTCATTAGTTATAATTATATCTTTCTTCTCAAATAACGGATACCA 232551 |||||| | ||||| ||| ||||||| | ||||| ||| | |||||||| ||| |||| Sbjct 49966 TATAAAGGTTAAAATGTCACTAGTTATTAATATATTTTTTTCTTCAAATAATGGAAACCA 50025 Query 232552 AATATCTTTGAACCAATCACCTA-ATTTAAA 232581 ||||||||||||||||| ||||| ||||||| Sbjct 50026 AATATCTTTGAACCAATTACCTACATTTAAA 50056 >seq308 Length=372676 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 192332 AATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 |||| |||| | | |||| | ||| |||||||| || ||||| ||| | || || | | Sbjct 102754 AATG-AAAGCATACCCTTTTG-GATGTTATAATCCGACAATGTACGTCCGTCTTCAAGCT 102697 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | || || || ||||| || | |||||||| || || || |||||||||||||| |||| Sbjct 102696 GCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGCGGGATACCTTCTTTATCTTGGATTT 102637 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | ||| ||||| |||| || || || || || || ||||| ||||| || || | Sbjct 102636 TGGCTTTGACATTTTCAATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTCCCTG 102577 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 | | || || | ||| || ||||| || Sbjct 102576 TAAGGGTCTTCACAAAAATTTGCATGTT 102549 >seq489 Length=245457 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 192425 GTGGTATT--CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || ||||| |||||||||||||| |||||| ||| ||||| || ||||| ||||| Sbjct 237632 GTAGTATTTACCTTCTTTATCTTGAATTTTAGATTTCACATTTTCAATTGAATCCGACGA 237573 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 |||||||| ||||| || ||||| ||||| || || || | || ||||||||||| | Sbjct 237572 CTCTACTTCGAGAGTGATCGTTTTCCCAGTCAACGTCTTCACGAAGATCTGCATTTTGCT 237513 Query 192543 AGAAA 192547 | ||| Sbjct 237512 AAAAA 237508 >seq1164 Length=50572 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/148 (76%), Gaps = 9/148 (6%) Strand=Plus/Plus Query 296946 ATAAAAAAGATATATTAATAACTAATAATTTATTAGAATTTATGGGATTTGGAGATATAA 297005 |||||||||| || ||||||||| | |||||||| ||||||||||||||| | ||||| Sbjct 30314 ATAAAAAAGAAATTTTAATAACTGAGAATTTATTGGAATTTATGGGATTTTGTGATATTG 30373 Query 297006 ATAACGCGGTCGCCAATTCCGACCACGTTAAAT-TA-AGAAATATTCGTAAGCATTTTAT 297063 |||||||| || |||| || | || ||||| || | ||| || | || ||||||| Sbjct 30374 ATAACGCGTCCGGAAATTACGGACGCGATAAATATAGAAAAAAATGCATA---ATTTTAT 30430 Query 297064 TGA----ATTTATAAAAGATAATAATAT 297087 || |||||||||| | |||| || Sbjct 30431 AGAATTCATTTATAAAATTTTATAACAT 30458 Score = 93.3 bits (102), Expect = 8e-14 Identities = 100/129 (78%), Gaps = 5/129 (4%) Strand=Plus/Minus Query 10620 ATAAATTCAATAAAATGCTTACGAATATTTCT-TA-ATTTAACGTGGTCGGAATTGGCGA 10677 || ||||| ||||||| || | || ||| | || ||||| || | || |||| || Sbjct 30439 ATGAATTCTATAAAAT---TATGCATTTTTTTCTATATTTATCGCGTCCGTAATTTCCGG 30383 Query 10678 CCGCGTTATTTATATCTCCAAATCCCATAAATTCTAATAAATTATTAGTTATTAATATAT 10737 |||||||| ||||| | ||||||||||||||| |||||||| | ||||||||| || | Sbjct 30382 ACGCGTTATCAATATCACAAAATCCCATAAATTCCAATAAATTCTCAGTTATTAAAATTT 30323 Query 10738 CTTTTTTAT 10746 ||||||||| Sbjct 30322 CTTTTTTAT 30314 >seq1306 Length=42871 Score = 89.7 bits (98), Expect = 1e-12 Identities = 92/118 (78%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 103946 ATTCATTTTTATAATAATTTAGTATTATATCATTACATTTTAAATAAAATTCTGGGGATA 104005 |||| ||| | ||||||||| ||| ||||||||||||||||||||||| | || |||| Sbjct 1727 ATTCTCTTTCAAAATAATTTAATATAATATCATTACATTTTAAATAAAACACAGGAGATA 1668 Query 104006 TCCAAGAGGCTATATCGAGTATAAGATCTTTACATACATAAAATCCAGTATATTGTTT 104063 |||| || |||| ||| | ||| | |||||||| ||||| |||| | ||| ||| Sbjct 1667 TCCAGGA-GCTAAATCTA--ATATGTTCTTTACACACATACGTTCCAAGAAATTATTT 1613 >seq306 Length=365715 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||||||||| ||||| ||||||||| || |||||||| || || || || Sbjct 86695 CCTTCTTTATCTTGAATTTTCGATTTTACATTTTCAATTGAATCTGATGACTCAACCTCA 86754 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || |||||||| || | ||||||| ||| || ||||| || Sbjct 86755 AGAGTTATTGTTTTACCCGTAAGGGTTTTAACAAAAATTTGCATCTT 86801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984408896854950