Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq476 154 3e-32 seq1214 111 3e-19 seq1015 105 1e-17 seq489 96.9 6e-15 seq308 86.0 1e-11 >seq476 Length=239761 Score = 154 bits (170), Expect = 3e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 39148 CTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 39207 |||| || ||||| || | ||||| ||||||||||||||||||||||||||||| || | Sbjct 226101 CTTCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCT 226042 Query 39208 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATG 39267 | | |||||||| || |||||||| | ||| || |||||||| |||||| ||||||| Sbjct 226041 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATG 225982 Query 39268 CTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTG 39327 | | || ||| | ||||| || ||| ||| ||||| || | |||||||||| Sbjct 225981 CAACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTG 225922 Query 39328 CtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 | || ||||| | | | || || |||| || || |||||||| Sbjct 225921 CCTTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAA 225879 >seq1214 Length=47825 Score = 111 bits (122), Expect = 3e-19 Identities = 92/112 (82%), Gaps = 3/112 (3%) Strand=Plus/Minus Query 49717 ATTATCAACAAAACCCATAAATTCTAATATATTTTCAGTAATTAATATTCCTTTTTTATC 49776 ||||| | ||| |||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 38632 ATTATTTAAAAATCCCATAAATTCTAATAAATTTTCAGTAATTAATATTTCTTTTTTATT 38573 Query 49777 GTTTAAAGAAGTCCATAATTCTAAAAATATTTTATCATTTGATAATTTTATA 49828 | ||| | | |||| ||||||||||||| |||||||| |||| |||| Sbjct 38572 ATATAATGGAATCCACAATTCTAAAAATA---TATCATTTTTAAATTATATA 38524 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/120 (80%), Gaps = 5/120 (4%) Strand=Plus/Plus Query 206384 ATAGTATATAAATGATAAAATATCATTAGTTATTAATATATCTTTCTCTTCAAATAGTGG 206443 ||||| |||||| | |||||| ||| ||||||||||||||| ||| |||||||||| ||| Sbjct 38841 ATAGTGTATAAAGGTTAAAATGTCACTAGTTATTAATATAT-TTTTTCTTCAAATAATGG 38899 Query 206444 ATACCATATATCTTTAAACCA-TGAT--CCTAAATTAATATTATAATCATTAT-ATTTTA 206499 | |||| |||||||| ||||| || |||| ||| | || ||| | |||| |||||| Sbjct 38900 AAACCAAATATCTTTGAACCACCTATTACCTACATTTAAATCATATTTTTTATCATTTTA 38959 Score = 86.0 bits (94), Expect = 1e-11 Identities = 93/121 (77%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 50518 ATTCAATAAATTTAC-CttttttatttttAATTGACGAGTCCCAGTTTTTGGGACGCGTC 50576 |||| ||||| ||| | ||| | | | || || ||| |||| || |||||||| Sbjct 38692 ATTCTATAAAATTATGCATTTCTTTCTATATTTAACGCGTCCGGAAATTCCGGACGCGTT 38633 Query 50577 AGATTATCAATAAAACCCATAAATTCTAATATATTTTCAGTGATTAATATTTCTTTTTTA 50636 | |||| | ||| |||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 38632 A--TTATTTAAAAATCCCATAAATTCTAATAAATTTTCAGTAATTAATATTTCTTTTTTA 38575 Query 50637 T 50637 | Sbjct 38574 T 38574 >seq1015 Length=63577 Score = 105 bits (116), Expect = 1e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 206384 ATAGTATATAAATGATAAAATATCATTAGTTATTAATATATCTTTCTCTTCAAATAGTGG 206443 ||||| |||||| | |||||| ||| ||||||||||||||| ||| |||||||||| ||| Sbjct 49960 ATAGTGTATAAAGGTTAAAATGTCACTAGTTATTAATATATTTTTTTCTTCAAATAATGG 50019 Query 206444 ATACCATATATCTTTAAACCATGATCCTAAATTAATATTATAATCATTATATTTTA 206499 | |||| |||||||| ||||| |||| ||| | |||||| | |||| |||| Sbjct 50020 AAACCAAATATCTTTGAACCAATTACCTACATTTAAATTATATTTTTTATCATTTA 50075 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/129 (77%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 260746 GAAACGCCATTATGAATAAAACACAAAATTTCATTTGTTATCAATATATTTTTCTTCTCA 260805 |||| |||| || ||||| ||||| ||| | ||||| ||||||||||| | ||| Sbjct 49952 GAAATACCATAGTGTATAAAGGTTAAAATGTCACTAGTTATTAATATATTTTTTTCTTCA 50011 Query 260806 AACAAGGGATACCATATATCTTTGAACCAATCGCCTA-ATTTAAACTCATAATTATTAT- 260863 || || ||| |||| |||||||||||||||| |||| ||||||| | ||| || |||| Sbjct 50012 AATAATGGAAACCAAATATCTTTGAACCAATTACCTACATTTAAA-TTATATTTTTTATC 50070 Query 260864 -TTTCAATA 260871 ||| |||| Sbjct 50071 ATTTAAATA 50079 >seq489 Length=245457 Score = 96.9 bits (106), Expect = 6e-15 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 171958 GTGGTATT--CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 || ||||| |||||||||||||| |||||| ||| ||||| || | ||| ||||| Sbjct 237632 GTAGTATTTACCTTCTTTATCTTGAATTTTAGATTTCACATTTTCAATTGAATCCGACGA 237573 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 |||||||| ||||| || ||||| ||||| || || || | ||| ||||||||||| | Sbjct 237572 CTCTACTTCGAGAGTGATCGTTTTCCCAGTCAACGTCTTCACGAAGATCTGCATTTTGCT 237513 Query 172076 ATAAA 172080 | ||| Sbjct 237512 AAAAA 237508 >seq308 Length=372676 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| || || | ||| |||| || | || || || || || || || | Sbjct 102733 ATGTTATAATCCGACAATGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAAACGT 102674 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || || || || |||||||||||||| ||||| ||| ||||| ||||| Sbjct 102673 TGTTGATCTGGCGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATAGTG 102614 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || || ||||| ||||| || || || | || || | || || ||| Sbjct 102613 TCGGAAGACTCAACCTCGAGAGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATTTGC 102554 Query 172068 ATTTT 172072 || || Sbjct 102553 ATGTT 102549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905072221854600