Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq288 123 7e-23 seq992 89.7 2e-12 seq649 89.7 2e-12 seq18 87.8 5e-12 >seq288 Length=409627 Score = 123 bits (136), Expect = 7e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||||| ||||||||||||||||| |||||||| | | ||| |||| || || | Sbjct 188565 CTTTTTTTTCCAACAGCATCAATTTCATCAATGAATAATATACATGGAGCATGTTTACGA 188624 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || | || | ||||| || | |||| ||||| ||||||| ||||||||| ||| Sbjct 188625 GCCATAGTGAACATATCTCTGACTCTTGATGGTCCAACACCAACAAACATTTCTAAAAAC 188684 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| | || ||| | |||| |||| |||||| || ||| ||| | || || Sbjct 188685 TCTGAACCAGAAACTGATAAAAATGGAACATCTGCTTCACCAGCTGTTGCTTTTGCGAGC 188744 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | ||||||||| || || || ||||| Sbjct 188745 AATGTCTTACCAGTACCCGGAGGTCC 188770 >seq992 Length=79738 Score = 89.7 bits (98), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 106901 TTTTTCATAGCAAAAGACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCC 106960 ||||||||||| ||||||||||||||| || || || |||| | |||| | Sbjct 25583 TTTTTCATAGCTGTTAGCGAACTCATACCATAAAATAATTTACACTTAGTGCCATTTGGT 25642 Query 106961 TCAA---TTAACTTACCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACG 107017 | || |||| | ||| ||||| ||| ||||| || | | || |||| ||| || Sbjct 25643 TTAATGGTTAATTCGCCTCCATTTTGATCATGTCCAGCTAGCATTCCACCAAGCATAACA 25702 Query 107018 AAATCAGCCCCGCCACCGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCAT-C 107076 |||||||| || |||| ||||| ||||| | ||| ||||| ||| | |||||||| | Sbjct 25703 AAATCAGCTCCAGCACCAAATGCCTTAGCAACATCTCCAGGACAAACACATCCACCATCC 25762 Query 107077 ACTAATAATATAAGTTTTATCGAT 107100 |||| || ||||| || | ||| Sbjct 25763 TGTAAT-ATTTAAGTATTTTAGAT 25785 Score = 84.2 bits (92), Expect = 6e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 156290 TTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATT 156349 |||||||| || || ||| ||||| | ||| |||| |||||| ||||||||||| Sbjct 53429 TTGAGGTCTAGGAGTAGAAGCATTGAACATTGTTGGTGAAGCATGAGTAAAATACTTAGA 53370 Query 156350 AGACATATAATCGTATGTCTCCTTAATCTTC-TCAAGATTAGACCCGTGAATACAGATAG 156408 |||||| |||| || || | || | || | |||| || || ||||| | || | Sbjct 53369 AGACATTAAATCATAAGT-TTCTATAGCTGCGTCAATATCTTCACCATGAATTCCAATTG 53311 Query 156409 AGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 | |||||||| ||| ||| |||||||| ||||||| ||||| |||| Sbjct 53310 AAACCCTCATTAACAAATGTTGAGGACGTTCTACAACTTTTCCATTAATT 53261 >seq649 Length=185080 Score = 89.7 bits (98), Expect = 2e-12 Identities = 255/383 (67%), Gaps = 13/383 (3%) Strand=Plus/Minus Query 252376 TTAAATAGGACACTATCCTCCTGATTATAACCAGAATGACTCATAATGGCTACAATA-AC 252434 || |||| |||||||| || ||||||||||| | || || | ||| || |||||| | Sbjct 159381 TTTAATATTACACTATCTTCTTGATTATAACCGGTATAACATAAAATTGCAACAATAGAA 159322 Query 252435 TTGCTCGCCAGATGGAATGGTATTGAGTTTGATAATA-TCCATAAGACGAGTATCAACAA 252493 || | |||| || | | | | | | |||| |||||| | || |||| Sbjct 159321 TTAATA-CCAGCAGGTA-GTTCTCTAAAACGTAAATACTCCATAGATCTTGTTGTTACAA 159264 Query 252494 GCGGTCTCATCGGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTG 252553 | ||| | || ||| | ||||||| ||| ||||||| | | || | |||| | Sbjct 159263 GAGGTTTATGTGGATAATAAAGAACATGAGCTAAGGTATCCATACGAACATGAAAATTGG 159204 Query 252554 TAACATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACT 252613 | | || | ||| | || || || ||||||||||| ||||| ||||| || ||| || Sbjct 159203 TTATGTAGACACCCATGGCTTGTTTGCCCATAGCACTTTGGTATGTATTCCTAGGACTCT 159144 Query 252614 GATTGTTTTCCGGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAA 252673 |||||| || ||||| |||||| ||||| ||| || || || | ||| |||| Sbjct 159143 GATTGTGATCAGGGAATGGAATGATAGATGCGCAAACTCCTAATATCATAGCTGGATGAA 159084 Query 252674 TTTCACAGTGACTGTAA--TG----ATACACATACTTGGAGTCAGTTGCCGTGAGTTGAT 252727 ||||||| || ||||| || ||| |||| | || ||||| | | | || Sbjct 159083 TTTCACAATGTGTGTAAGTTGTACAATAGGCATATTCTTTTTC--TTGCC-TTAAATCAT 159027 Query 252728 CAGGTTCCATAGCAATCATCGTA 252750 ||||| |||||||||||| ||| Sbjct 159026 CAGGTGACATAGCAATCATTGTA 159004 Score = 89.7 bits (98), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || |||||||| || ||||| || ||||| || || || || ||| | | || ||| Sbjct 159924 ATTGTCATACGGGAAGGGATAGCGTGAGGATTAATTATAATATCAGGTGTGATACCTTCA 159865 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTG 251963 |||||| |||||||| | || || || ||| ||||| |||||| ||||| ||||| Sbjct 159864 CAAGTGAAAGGCATATCTTCTTG-TCTGTATTGTATTCCACAAGTTCCTTTTTGACCGTG 159806 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 | |||| |||||||||||||| ||| | || |||| |||| |||||| Sbjct 159805 CCTAGAAGCAAACTTATCACCAATTTGAGGTATTCTTTCAGAGCGAACTCGAATCTTACA 159746 Query 252024 GAAGTTGTAACCATCA 252039 ||| || ||||| ||| Sbjct 159745 GAATTTATAACCCTCA 159730 >seq18 Length=1217284 Score = 87.8 bits (96), Expect = 5e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 60142 TGTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAAT 60199 |||||||||||| ||| ||| ||||| || || ||||| ||| | || |||||| Sbjct 172597 TGTGAAAATATA--TCTAGGACTAGCTGCATCTTTTCCACCTTGAAGTCTAGTACCAAAT 172654 Query 60200 TGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259 || || | || || | | ||| ||||||||| ||||| ||||||| || | | Sbjct 172655 TGACCTATGGGTTGTAGCAAATTTATGTTGTTACTTCCTACATAATTTTGTGCTAAATTC 172714 Query 60260 ACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 ||||| | | ||| |||| |||||||||||| ||||||| || | ||| | Sbjct 172715 ACAATTGTTGACATCAAAGACACTTCGCCGTGATGATATGCAGAATGCTCAGCTACAGAA 172774 Query 60320 CCACTGAATTGTGCGACTTTAATTTC 60345 ||| ||||| || ||||||||||| Sbjct 172775 CCAGCTAATTGAGCTACTTTAATTTC 172800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471711299353669