Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq60 96.9 4e-15 seq649 82.4 1e-10 >seq60 Length=834747 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 22384 CACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTTTCCCT 22443 |||||||| |||||| || ||||| || |||||| | || ||||| || |||||||| Sbjct 163749 CACGGAGACGGATATCCGTTCGATGGACCGGGTCAAGTGTTGGCTCACGCATTTTTCCCG 163690 Query 22444 GGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGG 22491 || ||||| |||||||||| |||||||||||| |||||| | ||| Sbjct 163689 GGCACTGGGCGAGGAGGAGACGCTCATTTTGATGAGGAAGAAGAATGG 163642 >seq649 Length=185080 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/168 (73%), Gaps = 10/168 (6%) Strand=Plus/Plus Query 192505 ATTATCCACAAAAACCACTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAGACGA 192562 |||||||||| ||||| ||||| || ||| ||| | || | ||||| ||||| | Sbjct 159246 ATTATCCACATAAACCTCTTGTAACAACAAGATCTATGGAGTATTTACGTT-TTAGAGAA 159304 Query 192563 TTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCAAGA 192622 || || |||||||||| |||||||||| || || ||||| || ||||| ||||| Sbjct 159305 CTA-CCTGCTGGTATTAATTCTATTGTTGCAATTTTATGTTATACCGGTTATAATCAAGA 159363 Query 192623 AGACAGTATTATTTTAAATAAAGCTTCTA---TTGAAAGAGGATTATT 192667 ||| ||| | || |||||| |||||| | ||||||||||| || Sbjct 159364 AGATAGTGTAATATTAAAT---GCTTCTGCAGTAGAAAGAGGATTCTT 159408 Score = 82.4 bits (90), Expect = 1e-10 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 192996 ATACCTGAAATAGGGGATAAATTTTGTTCG-GGAATGGCCCAAAAAGGAACTTGTGGTAT 193054 |||||| |||| || ||||| ||| ||| || | || | |||||||||||||||| || Sbjct 159773 ATACCTCAAATTGGTGATAAGTTTGCTTCTAGGCACGGTC-AAAAAGGAACTTGTGGAAT 159831 Query 193055 GATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTAT 193114 || ||||||||||||||| || || | |||||| ||| |||||||| || Sbjct 159832 ACAATACAGACAAGAAGATATGCCTTTCACTTGTGAAGGTATCACACCTGATATTATAAT 159891 Query 193115 TAATCCAAATTGTATTCCGTCCAGAATGACCATT 193148 |||||| | ||| || ||| | ||||| ||| Sbjct 159892 TAATCCTCACGCTATCCCTTCCCGTATGACAATT 159925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628486912120320