Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq208 132 9e-26 seq308 118 2e-21 seq489 91.5 3e-13 >seq208 Length=490746 Score = 132 bits (146), Expect = 9e-26 Identities = 209/297 (70%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 198327 ACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCAT 198386 ||||||||| ||| |||||| | | ||||||||| || ||| ||||| || |||||| Sbjct 174802 ACACATGACGATCTTTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCAT 174743 Query 198387 AGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGA-AGA 198445 |||| || | ||||||||||| ||||||||||| |||||||| || || || ||| Sbjct 174742 GGTTTCCTACGCATGTACTGGGCAAAAAAGATACTAGAATGGACTGATACTCCAGATAGA 174683 Query 198446 CGCTTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAA 198505 || | | || || ||||| || | || || | || || || |||| Sbjct 174682 -GCACTAGCTGATGCAATTTATCTCAATGACAAATATAGCATGGATGGTCGTGACCCTAG 174624 Query 198506 CGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAG 198565 || | || || ||||||||||| || || || | ||||||| | |||| |||||| Sbjct 174623 TGGTTTTGTTGGGTGTATGTGGTCAATATGTGGCATTCATGATCAGGGATGGAGAGAAAG 174564 Query 198566 ACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGA 198622 | || ||||| || || || |||||||| ||||| || | |||| ||| ||||| Sbjct 174563 AGAAATTTTTGGAAAAATTAGGTATATGAACTATGAAGGATGCAAGAGAAAGTTTGA 174507 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 197731 TTATACAAGTAGACGCTCATAATATAGTACCTTGTTGGGAAGCTTCTTACAAAGAAGAAT 197790 ||||||| || || | |||||||| ||||||||||||| ||| ||| ||||| |||||| Sbjct 175623 TTATACAGGTTGATTCCCATAATATTGTACCTTGTTGGGTAGCCTCTGACAAACAAGAAT 175564 Query 197791 ACGGTGCAAGAACTTTAAGAAAAAAGATATTTGATAAATTATATGAATATATGACAGAAT 197850 | ||||||||| || |||| || || | |||||| || | | | ||||||| Sbjct 175563 ATTCTGCAAGAACAATACGAAACAAAATCAACAACAAATTACCCGAGTTTTTAACAGAAT 175504 Query 197851 TTCC 197854 |||| Sbjct 175503 TTCC 175500 >seq308 Length=372676 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || |||||||| || | | | |||||||| || || || || || ||||| Sbjct 102739 TTTTGGATGTTATAATCCGACAATGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATC 102680 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | |||||||||||| || || ||||| |||||||| || || ||||| ||||||||| Sbjct 102679 AAACGTTGTTGATCTGGCGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCA 102620 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || || || || || || || | ||| || ||||| ||||| | ||||| ||||| Sbjct 102619 ATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAA 102560 Query 82803 ATCTGCAT 82810 || ||||| Sbjct 102559 ATTTGCAT 102552 >seq489 Length=245457 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 82702 GTATT--CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTC 82759 ||||| ||||| ||||||||||| || | ||| ||||||||||| | ||| | || Sbjct 237629 GTATTTACCTTCTTTATCTTGAATTTTAGATTTCACATTTTCAATTGAATCCGACGACTC 237570 Query 82760 TACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| | ||| ||||| || || ||||||||||| || || ||||||||| Sbjct 237569 TACTTCGAGAGTGATCGTTTTCCCAGTCAACGTCTTCACGAAGATCTGCATT 237518 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||||| | ||||| ||||| || ||||||||||| || || || ||||| || Sbjct 239822 ACCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGA 239763 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || ||||| |||||||| |||||||| || | | ||| ||||| || || Sbjct 239762 CAGAGTACGCCCATCTTCAAGTTGTTTGCCAGCAAATATCAAACGTTGCTGATCAGGTGG 239703 Query 82703 TATTCCT 82709 || ||| Sbjct 239702 AATACCT 239696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981756288450943