Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq284 98.7 1e-15 seq265 96.9 5e-15 seq230 96.9 5e-15 seq89 96.9 5e-15 seq2424 95.1 2e-14 seq210 95.1 2e-14 seq1061 87.8 2e-12 seq932 87.8 2e-12 seq708 87.8 2e-12 seq466 87.8 2e-12 seq622 84.2 3e-11 >seq284 Length=402928 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||| Sbjct 347421 CAGTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 347480 Query 11786 TTCCCCGACGAGGAGG 11801 ||||||| || ||||| Sbjct 347481 TTCCCCGCCGGGGAGG 347496 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 347424 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 347483 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 347484 CCCGCCGGGGAG 347495 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11723 AACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGT 11781 ||| || |||||| ||||||||||||| |||| |||| ||||| | |||||||||||||| Sbjct 378899 AACACAATCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGT 378840 Query 11782 TCGATTCCCCGACGAGGAG 11800 ||||||||||| || |||| Sbjct 378839 TCGATTCCCCGCCGGGGAG 378821 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 378892 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 378833 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 378832 CCCGCCGGGGAG 378821 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 378821 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 378880 Query 139413 TACTAACGAGGATTTTG 139429 ||||| |||||||| || Sbjct 378881 TACTACCGAGGATTGTG 378897 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 347495 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 347436 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 347435 TACTACCGAGGA 347424 >seq265 Length=408381 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||| Sbjct 167218 AGTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 167277 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 167278 TCCCCGCCGGGGAGG 167292 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 167220 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 167279 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 167280 CCCGCCGGGGAG 167291 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 167291 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 167232 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 167231 TACTACCGAGGA 167220 >seq230 Length=456428 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||| Sbjct 144933 AGTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 144874 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 144873 TCCCCGCCGGGGAGG 144859 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 144934 TAGTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 144875 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 144874 TTCCCCGCCGGGGAG 144860 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 144860 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 144919 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 144920 TACTACCGAGGA 144931 >seq89 Length=772902 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 600075 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 600016 Query 8718 CCCGACGAGGAGC 8730 |||| || ||||| Sbjct 600015 CCCGCCGGGGAGC 600003 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||| Sbjct 600076 GTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 600017 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 600016 CCCCGCCGGGGAG 600004 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 600004 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 600063 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 600064 TACTACCGAGGA 600075 >seq2424 Length=14082 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 7204 TAATCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 7263 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 7264 TTCCCCGCCGGGGAG 7278 Score = 93.3 bits (102), Expect = 6e-14 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11717 TTGTGTAACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGAC 11775 |||| ||| | |||||| ||||||||||||| |||| |||| ||||| | |||||||| Sbjct 7194 TTGTTAAACGTAATCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGAC 7253 Query 11776 CGGGGTTCGATTCCCCGACGAGGAGG 11801 ||||||||||||||||| || ||||| Sbjct 7254 CGGGGTTCGATTCCCCGCCGGGGAGG 7279 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7278 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 7219 Query 139413 TACTAACGAGGATT 139426 ||||| |||||||| Sbjct 7218 TACTACCGAGGATT 7205 >seq210 Length=519240 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 439783 TAATCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 439724 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 439723 TTCCCCGCCGGGGAG 439709 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 439780 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 439721 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 439720 CCCGCCGGGGAGG 439708 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 439709 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 439768 Query 139413 TACTAACGAGGATT 139426 ||||| |||||||| Sbjct 439769 TACTACCGAGGATT 439782 >seq1061 Length=73466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 8665 TAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACG 8724 |||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| || Sbjct 30032 TAGTATAGTGGTAAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCGATTCCCCGCCG 29973 Query 8725 AGGAGC 8730 |||| Sbjct 29972 GAGAGC 29967 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 11737 TAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACG 11795 ||||||||||||| |||| |||| ||||| ||||||||||||||||||||||||||| || Sbjct 30032 TAGTATAGTGGTAAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCGATTCCCCGCCG 29973 Query 11796 AGGAGGGAGGTTAACGCG 11813 ||| | || ||||| Sbjct 29972 GAGAGCCATTTTGACGCG 29955 >seq932 Length=98639 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | |||| ||||||| |||||||| Sbjct 72874 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGTGACCGGGTTTCGATTC 72933 Query 8718 CCCGACGAGGAGC 8730 |||| || ||||| Sbjct 72934 CCCGCCGGGGAGC 72946 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| ||||||||||||| |||| |||| ||||| | |||| ||||||| ||||||| Sbjct 72873 GTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGTGACCGGGTTTCGATT 72932 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 72933 CCCCGCCGGGGAG 72945 >seq708 Length=148384 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||| | ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 79826 TCCTCGGTAGTATAGTGATAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 79885 Query 8718 CCCGACGAGGAGC 8730 |||| || |||| Sbjct 79886 CCCGCCGGCGAGC 79898 Score = 82.4 bits (90), Expect = 1e-10 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||| |||||||||| || |||| |||| ||||| | |||||||||||||||||| Sbjct 79823 CAATCCTCGGTAGTATAGTGATAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 79882 Query 11786 TTCCCCGACG 11795 ||||||| || Sbjct 79883 TTCCCCGCCG 79892 >seq466 Length=244755 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||| |||||||||||| ||||| |||| |||| || |||||||||| ||||||| Sbjct 141298 TAATCCTCAGTAGTATAGTGGTAAGTATCCCCGCCTGTAGCGCGGGAGACCGAGGTTCGA 141239 Query 8715 TTCCCCGACGAGGAGC 8730 ||||||| || ||||| Sbjct 141238 TTCCCCGCCGGGGAGC 141223 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||| ||||||||||||| |||| |||| |||| || |||||||||| |||||||||| Sbjct 141295 TCCTCAGTAGTATAGTGGTAAGTATCCCCGCCTGTAGCGCGGGAGACCGAGGTTCGATTC 141236 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 141235 CCCGCCGGGGAG 141224 >seq622 Length=179467 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 8665 TAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACG 8724 ||||||||| || ||||| |||| ||||| | ||||||||||||||||||||||||| || Sbjct 114827 TAGTATAGTTGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGCCG 114768 Query 8725 AGGAGC 8730 ||||| Sbjct 114767 GGGAGC 114762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652798798923280