Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq273 95.1 3e-14 seq18 91.5 3e-13 seq476 84.2 5e-11 >seq273 Length=424708 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| ||||| | |||| |||| | |||| ||| | ||||||||||| || | Sbjct 105515 CAAAAGTCTGGTAAACCTCTAAAAGCAATTAAAGCACGGTTGAAAGGTAAAGAAGGAAGA 105456 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 |||||||| ||| | |||||||||||||| |||||| ||| ||| |||||| || ||| Sbjct 105455 ATTCGAGGAAATTTGATGGGAAAACGTGTAGATTTTTCTGCTCGAACTGTAATTACTCCT 105396 Query 305066 GATTCTCAAATT--AGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAA 305123 ||| |||||| || || | ||| | || || || | |||||| ||| | | Sbjct 105395 GAT--CCAAATTTAAGAATTGACGAAGTTGGTGTACCTCGTACTATTGCTCAAAATATGA 105338 Query 305124 CATTTCCAGAGAAAGTTA 305141 ||||||| |||| |||| Sbjct 105337 CATTTCCTGAGATTGTTA 105320 >seq18 Length=1217284 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 279071 CCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCTTTATTT 279130 || |||||||| ||||| ||| ||||| | || || ||| ||| | || | Sbjct 174028 CCTAAACTTGAAGATGCTAACGATGCTGGTACCAGAAATTCAATAGATTGTACATTGATA 173969 Query 279131 CTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGT 279190 | ||||| |||||||| ||| |||| || || |||| ||| ||| |||||||| Sbjct 173968 TTAACTGAAGGAGATTCAGCTAAATCATTGGCAGTTTCTGGATTAGGTGTGGTTGGTCGT 173909 Query 279191 GATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGA 279240 ||||||||||| ||||||||| | ||||||||| | | |||| ||| || Sbjct 173908 GATAAATATGGAGTATTTCCTCTCAGAGGTAAATTGTTAAATGTTCGCGA 173859 >seq476 Length=239761 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 131798 AAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCC---GCTAATTTTTCT 131854 |||||||| ||||| |||||| |||||||||| ||| |||| | || | |||| | Sbjct 225912 AAAAAGAAGGCAGATTGGGCTCTTAAATGGAT--AAG-TGATAGCAAAGCAACTTTTGGT 225968 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 ||| | || || |||||| ||| ||||||||||| || || || ||| ||| Sbjct 225969 GAAAGGTTAGTTGCATTTGCTGCTGTGGAAGGTATATTTTTCTCTGGAAGTTTTGCTGCA 226028 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 | |||||| | ||||| | ||||| ||||| ||| | | || |||| | | || Sbjct 226029 TTATTTTGGTTGAAGAAAAGAGGATTAATGCCAGGATTAACTTTTAGCAATGAGCTGATT 226088 Query 131975 TCGAGAGATGAAGCAT 131990 || |||||||||| || Sbjct 226089 TCTAGAGATGAAGTAT 226104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186727083558157