Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq80 150 3e-30 seq898 91.5 2e-12 >seq80 Length=763085 Score = 150 bits (166), Expect = 3e-30 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| |||||||| || ||||||||| |||| | | | || || || | | Sbjct 679744 ATCTACAAAGTGCTCAAACAAGTGCACCCCGACACCG--GCGTC-TCGTCGAA---GGCA 679691 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||| | |||| ||||||| || ||||||| || Sbjct 679690 ATGAGCATCATGAACAGCTTCGTCAACGACCTCTTCGAGCGCATCGCCAGCGAGGCCAGT 679631 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | | ||||||||| | |||||| ||| | |||||||| || ||||| Sbjct 679630 CGCCTGGCCCAGTACAACAAGCGTAGAACGATCAGCAGTAGGGAGATCCAAACGGCCGTC 679571 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| |||||||||||||| |||||||||| ||| ||||| Sbjct 679570 CGRCTTTTGTTGCCCGGCGAACTGGCCAAGCACGCCGTCAGCGAAGGCAC 679521 Score = 127 bits (140), Expect = 3e-23 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| ||||| ||| |||| | | |||| ||| || Sbjct 611161 ATCTACAAGGTGCTGAAGCAAGTGCATCCCGACACCGGCGTGTCATC------CAAAGCC 611214 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||| || |||| ||||||| | ||||| || || Sbjct 611215 ATGAGCATCATGAACAGTTTCGTCAACGATCTGTTCGAGCGCATCGCCGCCGAGTCCAGT 611274 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| || || || || |||||||| || ||||| Sbjct 611275 CGTCTTGCCCACTACAACAAGCGTTCGACCATTACCAGCCGGGAGATCCAAACTGCCGTC 611334 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| ||| ||| |||||| |||||||||| || ||||||| Sbjct 611335 CGACTCTTGTTGCCCGGTGAATTGGCCAAGCACGCCGTCAGTGAAGGCACCA 611386 Score = 127 bits (140), Expect = 3e-23 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| ||||| ||| |||| | | |||| ||| || Sbjct 673587 ATCTACAAGGTGCTGAAGCAAGTGCATCCCGACACCGGCGTGTCATC------CAAAGCC 673640 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||| || |||| ||||||| | ||||| || || Sbjct 673641 ATGAGCATCATGAACAGTTTCGTCAACGATCTGTTCGAGCGCATCGCCGCCGAGTCCAGT 673700 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| || || || || |||||||| || ||||| Sbjct 673701 CGTCTTGCCCACTACAACAAGCGTTCGACCATTACCAGCCGGGAGATCCAAACTGCCGTC 673760 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| ||| ||| |||||| |||||||||| || ||||||| Sbjct 673761 CGACTCTTGTTGCCCGGTGAATTGGCCAAGCACGCCGTCAGTGAAGGCACCA 673812 >seq898 Length=103992 Score = 91.5 bits (100), Expect = 2e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 ||||||||| || |||||||| || |||| ||||||| | |||| | |||||||| Sbjct 103866 ATCATGAACAGTTTCGTCAACGATCTGTTCGAGCGCATCGCCGCCGAATCTAGTCGCCTG 103807 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 || | || ||||||||| || || | || || || ||||||||||| ||||| Sbjct 103806 GCYCACTACAACAAGCGTTCGACCATTACTAGYCGGGAAATTCAGACCGCCGTCCGCCTC 103747 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 | ||| ||| ||| |||||| ||||||||| Sbjct 103746 TTGTTGCCCGGTGAATTGGCCAAACACGCCGTC 103714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177267500989194