Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq476 140 4e-28 seq2933 116 5e-21 seq74 107 3e-18 seq992 104 3e-17 >seq476 Length=239761 Score = 140 bits (154), Expect = 4e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 || ||||||||| ||||| | ||||||||||||||||| || || || ||| || || Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAA 40002 ||||| ||||||||||| || ||||| | ||| || ||| | |||||| ||| | | Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAG 225656 Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||||||||| || || ||||| ||| ||||||||||| ||||| || | ||||| Sbjct 225655 ATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAATG 225596 Query 40063 TTTTTCATCGGGTGTCAATTTATTCCAGTCAT 40094 |||||| |||||| || |||| |||| Sbjct 225595 ACGTTCATCATCAGTCAATCTAATCCAATCAT 225564 Score = 123 bits (136), Expect = 3e-23 Identities = 160/221 (72%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||||||| ||| | || || ||| || | ||| ||||||| || | || || Sbjct 226099 TCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCTTC 226040 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | |||||||| ||||||||| |||||| || || || ||||| || || ||||||||| Sbjct 226039 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATGCA 225980 Query 39761 ACAAGTCTCTCTCCGTAACTTG------TATCATTATGTATCCACTTCTGTGCCCAATCA 39814 || | || || || || ||| ||||| | |||||| || | |||||||| Sbjct 225979 ACTAACCTTTCACCAAAAGTTGCTTTGCTATCACT---TATCCATTTAAGAGCCCAATCT 225923 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 || ||||| |||||||| ||||| ||||| || |||||||| Sbjct 225922 GCCTTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAA 225882 >seq2933 Length=10010 Score = 116 bits (128), Expect = 5e-21 Identities = 130/171 (76%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 ||||| ||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||| Sbjct 839 GTATAGGGTTCTATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATG 898 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTT- 68879 ||||| | ||| || |||||||| ||| ||| | ||||| ||||||| || ||| Sbjct 899 GGTGCTAACAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTA-ATATTTC 957 Query 68880 CCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||||| ||| | |||| || |||||||| | ||| || |||| ||| Sbjct 958 CCAATTCCATAAATCACTGGGCTTTACATTCCACATATCATACTGTAAAAT 1008 >seq74 Length=781666 Score = 107 bits (118), Expect = 3e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 ||||||||||| | ||||||||||||||| |||||||| || ||||| || || ||||| Sbjct 485162 GTATATGGTTCAATAGATTCATTATTTCCAAGAATTTGTGCTGTTGAAGCGGTAGGCATC 485103 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGT-TT 68879 ||||| | || || |||||||| |||||| ||| | ||| | |||| || | | Sbjct 485102 GGTGCTAATAACAATGAATTTCTAACTCCATGT-TTAGCAATTTTTTTTTTTAATATATC 485044 Query 68880 CCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||| |||||||| |||| || |||||||| | ||| || || | ||| Sbjct 485043 CCAGTCCCAAAGGTCAGTAGGCTTTACATTCCACATATCATACTGCAAAAT 484993 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || ||||| ||||| | || ||||||| | ||||||||| || ||| Sbjct 483987 AAATCGTCACCCCAGACATCTGAAAGACCTGGACATTTACGTGGACACATTAAGCTCCAA 483928 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | |||| ||| || ||| |||||||| ||| || ||||||||||||| ||| | | Sbjct 483927 GGTTGATCAGCCTCAAYACGTCTCATAAATTCATCAGGTATCCAAAGAGCTAAAAATAAA 483868 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTATTTTT 69674 ||||| ||| | | ||||| ||| || |||||||| Sbjct 483867 TCTCTAGTTTTTTCTTCTTTATTACCAGTATTTTT 483833 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 || || || || || ||||| ||||||||||| || || || || ||||||| |||||| Sbjct 484407 TACTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTCTGATTG 484348 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 || || |||||||| || || || || | | | || ||||||||||||| ||||| Sbjct 484347 CTTTTGGCATTACAGGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 484289 >seq992 Length=79738 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || ||||| ||||| ||||| | ||| ||||||| | ||||||||| || ||| Sbjct 54024 AAATCATCACCCCAGACATCTGAAAGTCCGGGACATTTACGTGGACACATTAAGCTCCAA 53965 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | |||| ||| ||| ||| |||||||| ||| || ||||||||||||| ||| | | Sbjct 53964 GATTGATCAGCCTCAACACGTCTCATAAATTCATCAGGTATCCAAAGAGCTAAAAATAAA 53905 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTATTTTT 69674 ||||| ||| | | ||||| ||| || |||||||| Sbjct 53904 TCTCTAGTTTTTTCTTCTTTATTGCCAGTATTTTT 53870 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 ||||||| ||| ||||| | | |||||||||||||||||| ||||| ||||| ||| Sbjct 42893 TATGTTTTATATGGTCCATATTTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATAA 42952 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||| ||||| ||| | | || |||||| |||||| | |||| || ||||| Sbjct 42953 TAAATGGTTTCATGAATTTGTATGTTAAGATCTCTAGCTTCTTTAGTATCAAAAGGATAT 43012 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAG 69124 | | ||||||| |||||| ||||| || | ||||| || |||| Sbjct 43013 TTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAATAG 43061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686860398688680