Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq166 120 2e-22 seq607 111 1e-19 seq476 111 1e-19 >seq166 Length=548810 Score = 120 bits (132), Expect = 2e-22 Identities = 235/345 (68%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 40861 ATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATG 40920 || ||||||| | || || |||||||||||||| | |||||||| || || | |||| Sbjct 535798 ATTAAGGTGACTTGGGACCCGTTTATGGATTTCAATGGCGACATTACGGTGCTGAGTATG 535739 Query 40921 ACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATA 40980 | | || | ||||| | ||||| || |||||| | || ||| || ||| Sbjct 535738 TAGATGTACACACAGATTACTCAGGGAAAGGCATTGATCAACTTCAAAACGTCATCAATA 535679 Query 40981 CGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACG 41040 | || ||| | | || ||| | | || || | || || ||||| ||| || | Sbjct 535678 CAATCAAAACTAACCCTGATGACAGGCGAATGCTTATGATTGCATGGAATCCATGCGATG 535619 Query 41041 TACATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGT 41099 ||| | ||||| || ||||| ||||| |||| || ||||||| || | |||| Sbjct 535618 TACCTAAAATGGCCTTACCACCATGTCA-TTGTCTGGTACAGTTTTTTGTCGCCGATGGG 535560 Query 41100 GAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAAC 41159 | |||| |||||| |||| ||| |||| | ||||||||| |||||||| || || || Sbjct 535559 TATTTGTCCTGTCAAATGTACCAACGATCGGCTGACATGGGTCTAGGGGTACCCTTCAAT 535500 Query 41160 ATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACC 41204 || || |||||| | | || || || ||||| || || || ||| Sbjct 535499 ATTGCCAGTTATTCATTACTTACATACATGATAGCCCATGTCACC 535455 >seq607 Length=188712 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 19324 CAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAA 19383 || || || || ||||| || || ||||||| ||||| ||||| || ||| ||| Sbjct 55601 CATTTAGGRTGCAAACACGTCAAAGGTATTTTGCTGTATGGTCCACCTGGAACTGGTAAA 55542 Query 19384 ACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCT---CCCAAAATTGTA 19440 |||||||| || ||| || || | || | | ||| || | ||||||||||| Sbjct 55541 ACATTAATGGCTAGACAAATTGGACAAATGTT---AAATGCACGTGAACCCAAAATTGTT 55485 Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 ||||| ||| |||| || | |||||||| ||| |||| |||| |||| || || | || Sbjct 55484 AATGGCCCTCAAATTTTGGACAAATATGTTGGTGAATCTGAAGCAAATATAAGAAGGTTA 55425 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAA 19526 || || || |||||||||||| |||| Sbjct 55424 TTCGCAGAYGCTGAAGAAGAAGAAAA 55399 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG---GT 19605 ||||| || || || | |||||| | || || || ||||| ||||||||||| || Sbjct 55318 TTGCATATAATCATCTTTGATGAAATTGATGCTATTTGTAAAGCAAGAGGTTCTGTTGGT 55259 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | |||| ||||| || ||||| || || ||||| | | | ||| | ||||| ||| Sbjct 55258 GGAAATACAGGAGTGCACGACACCGTAGTGAATCAGTTGTTAGCTAAAATTGACGGAGTT 55199 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 | ||||| || || || |||||||| || |||||||||||| Sbjct 55198 GAGCAACTAAACAACATCTTAGTTATAGGTATGACTAATAGA 55157 >seq476 Length=239761 Score = 111 bits (122), Expect = 1e-19 Identities = 161/224 (72%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 || |||||||| || ||||| | || || | | ||| | || ||||| ||||| ||||| Sbjct 225879 TTATTTAATGCCATTGAAACCATGCCATGTG-TAAAAAAGAAGGCAGATTGGGCTCTTAA 225937 Query 44098 ATGGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 |||||||| || || | ||||||| ||| | | || || ||||| | |||||| Sbjct 225938 ATGGATAAGTGATAGCAAAGCAACTTTTGGTGAAAGGTTAGTTGCATTTGCTGCTGTGGA 225997 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| || || || || ||| ||||| || |||||||||| |||||| |||| || || Sbjct 225998 AGGTATATTTTTCTCTGGAAGTTTTGCTGCATTATTTTGGTTGAAGAAAAGAGGATTAAT 226057 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAG 44258 ||| || || || ||| |||||| | || | | ||||||| Sbjct 226058 GCCAGGATTAACTTTTAGCAATGAGCTGATTTCTAGAGATGAAG 226101 Score = 102 bits (112), Expect = 6e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 |||||| |||| || || || ||||||||||| || || || || ||||||||| Sbjct 225596 CATTTTGTATCCCACGTATTAGCATTTTTTGCTGCTTCAGATGGCATTGTTAATGAAAAT 225655 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 | ||| || ||| | |||||||||||| || | || || ||||||||||||| || Sbjct 225656 CTTGTTGAACGATTTTCTCAAGAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGATTC 225715 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 ||||| || || ||||| ||||| |||||||| || | | || ||||| || || Sbjct 225716 CAAATAATGATGGAGAATATACATTCAGAAATGTATAGCTTATTAATTGATACATATAT 225774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428694400185