Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq166 87.8 2e-12 >seq166 Length=548810 Score = 87.8 bits (96), Expect = 2e-12 Identities = 223/337 (66%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| || || | | ||||| ||||| ||||| || ||||||| Sbjct 535458 GACATGGGCTATCATGTATGTAAGTAATGAATAACTGGCAATATTGAAGGGTACCCCTAG 535517 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||| |||||||||| || | || ||||||| | ||||| ||||| | || Sbjct 535518 ACCCATGTCAGCCGATCGTTGGTACATTTGACAGGACAAATACCCATCGGCGACAAAAAA 535577 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || || || || || || | ||||| ||| | ||| || ||||| || Sbjct 535578 CTGTACCAGACAATGACATGGTGGTAAGGCCATTTTAGGTACATCGCATGGATTCCATGC 535637 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 ||| | || | |||||||||||||| || | || | ||| |||| || || Sbjct 535638 AATCATAAGCATTCGCCTGTCATCAGGGTTAGTTTTGATTGTATTGATGACGTTTTGAAG 535697 Query 6856 CTGGTCCGCTCCCTGTCCC-GAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGT 6914 || | | | ||| |||| || || || | | | |||||| || || | | Sbjct 535698 TTGAT-CAATGCCTTTCCCTGAGTAATCTGTGTGTACATCTACATACTCAGCACCGTAAT 535756 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 ||| ||| || || || || || || |||||||| || Sbjct 535757 GTCGCCATTGAAATCCATAAACGGGTCCCAAGTCACC 535793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 223/337 (66%), Gaps = 2/337 (1%) Strand=Plus/Minus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || |||||||| || || || || || || ||| |||| | || || |||||| | Sbjct 535793 GGTGACTTGGGACCCGTTTATGGATTTCAATGGCGACATTACGGTGCTGAGTATGTAGAT 535734 Query 34454 AGCGAAGCGGACTATTC-GGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512 | | || || || |||| ||| | | | || || || |||| ||| | || | Sbjct 535733 GTACACACAGATTACTCAGGGAAAGGCATTG-ATCAACTTCAAAACGTCATCAATACAAT 535675 Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 || |||||||||||||| | || | ||| || ||||| || ||| | || Sbjct 535674 CAAAACTAACCCTGATGACAGGCGAATGCTTATGATTGCATGGAATCCATGCGATGTACC 535615 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCT 34632 | ||||| | || || || || || || || | ||||| ||||| | | Sbjct 535614 TAAAATGGCCTTACCACCATGTCATTGTCTGGTACAGTTTTTTGTCGCCGATGGGTATTT 535555 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 |||||| || | || |||||||||| |||||||| ||||||| || ||||| ||||| Sbjct 535554 GTCCTGTCAAATGTACCAACGATCGGCTGACATGGGTCTAGGGGTACCCTTCAATATTGC 535495 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| | | || || |||||||| || |||||| Sbjct 535494 CAGTTATTCATTACTTACATACATGATAGCCCATGTC 535458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448230814310640