Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq476 122 1e-22 seq992 102 1e-16 seq74 95.1 2e-14 >seq476 Length=239761 Score = 122 bits (134), Expect = 1e-22 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 ||||||||||| ||| | || || ||| || | || ||||||| ||| | ||| | Sbjct 226101 CTTCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCT 226042 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | | |||||||| ||| || ||| |||||| || ||||| ||||| || || ||||||| Sbjct 226041 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATG 225982 Query 48283 CGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAG 48339 | | || || || || | |||| | | | |||||| | |||||||| | Sbjct 225981 CAACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTG 225922 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 48387 ||||||| |||||||| ||||| ||||| || |||||||| | ||||| Sbjct 225921 CCTTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAAAAGT 225874 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 || ||||| ||||| | ||||||||||| || || ||||| || || || || ||| Sbjct 225771 TATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTGGAAT 225712 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTC 48530 || ||||||||||| || || || | || || || | ||||||||||| | | ||| Sbjct 225711 CCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTT 225652 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATG 48574 ||||| || || ||||| ||||||||||||||||||||| || Sbjct 225651 TCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 225608 >seq992 Length=79738 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423 ||||||| ||| ||||| | | | ||||||||||||||| ||||| || || || ||| Sbjct 42893 TATGTTTTATATGGTCCATATTTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATAA 42952 Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAA 77483 ||||| ||||| ||| | | || |||||| ||||| || ||||||| ||||| Sbjct 42953 TAAATGGTTTCATGAATTTGTATGTTAAGATCTCTAGCTTCTTTAGTATCAAAAGGATAT 43012 Query 77484 TGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAG 77532 | | |||||| |||||||||||| || | ||||| ||||||| Sbjct 43013 TTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAATAG 43061 >seq74 Length=781666 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 ||||||||||| | ||||||||| ||||| | |||||| || || ||||| || ||||| Sbjct 485162 GTATATGGTTCAATAGATTCATTATTTCCAAGAATTTGTGCTGTTGAAGCGGTAGGCATC 485103 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT-TT 77287 ||||| | || || |||||| | |||||| | ||||| | ||||| |||| | Sbjct 485102 GGTGCTAATAACAATGAATTTCTAACTCCATGTTTAGCAATTTTTTTTTTTA-ATATATC 485044 Query 77288 CCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 ||| |||||||| || | ||| |||| ||| | ||| || || | ||| Sbjct 485043 CCAGTCCCAAAGGTCAGTAGGCTTTACATTCCACATATCATACTGCAAAAT 484993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694619851899680