Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq476 138 2e-27 seq2933 104 3e-17 seq992 96.9 5e-15 seq74 95.1 2e-14 >seq476 Length=239761 Score = 138 bits (152), Expect = 2e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 46896 AACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTG 46955 || ||||||||| ||||| | ||||||||||||||||| || || || || || || Sbjct 225775 AATATATGTATCAATTAATAAGCTATACATTTCTGAATGTATATTCTCCATCATTATTTG 225716 Query 46956 AAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA 47015 ||||| ||||||||||| || ||||| | || || ||| | ||||||||||| |||| Sbjct 225715 GAATCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTCA-ACAA 225657 Query 47016 -ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAAT 47074 ||| ||||| || || ||||| ||||||||||||||| ||||| || | ||||| Sbjct 225656 GATTTTCATTAACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATACAAAAT 225597 Query 47075 ATTTTTCATCGGTAGTCAGTTTATTCCAGTCAT 47107 |||||| ||||| | || |||| |||| Sbjct 225596 GACGTTCATCATCAGTCAATCTAATCCAATCAT 225564 Score = 122 bits (134), Expect = 1e-22 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||||||| ||| | || || ||| || | || ||||||| ||| | || | Sbjct 226101 CTTCATCTCTAGAAATCAGCTCATTGCTAAAAGTTAATCCTGGCATTAATCCTCTTTTCT 226042 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | | |||||||| || || ||| |||||| || ||||| ||||| ||||| || |||| Sbjct 226041 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCCACAGCAGCAAATG 225982 Query 46772 CGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAG 46828 | || | || || || || | || | ||| | ||||| | |||||||||| | Sbjct 225981 CAACTAACCTTTCACCAAAAGTTGCTTTGCTATCACTTATCCATTTAAGAGCCCAATCTG 225922 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 |||| || |||||||| ||||| ||||| || |||||||| | ||||| Sbjct 225921 CCTTCTTTTTTACACATGGCATGGTTTCAATGGCATTAAATAAAAAGT 225874 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46444 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAA 46503 || ||||| | | ||||||||| ||||| ||||| ||||| | |||| |||||||| Sbjct 226372 CCCAATTCAGCTAACAGTCTATCAGCAACAAATTCAATATATATGGCCATCTTTTCACAA 226313 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 |||| || | | | | || |||| ||| | || | ||| |||||||||||||| ||| Sbjct 226312 CTCATGCCAACCATTCTAACAGGTAAAGCATTTGTCAAAAAATCTTGTTCAATAGTCACA 226253 Query 46564 GCATCCGATATTAT 46577 || || | ||||| Sbjct 226252 GCTTCACAAATTAT 226239 >seq2933 Length=10010 Score = 104 bits (114), Expect = 3e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823 ||||| ||||| | ||||||||| || || | ||||||||| ||||||||||| ||||| Sbjct 839 GTATAGGGTTCTATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATG 898 Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTT- 75882 ||||| | ||| || |||||| | ||| ||| | ||||| ||||||| |||||| Sbjct 899 GGTGCTAACAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTA-ATATTTC 957 Query 75883 CCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||||| ||| | ||| || |||| ||| | ||| || |||| ||| Sbjct 958 CCAATTCCATAAATCACTGGGCTTTACATTCCACATATCATACTGTAAAAT 1008 Score = 86.0 bits (94), Expect = 9e-12 Identities = 147/211 (70%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 75949 TGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAA 76008 |||||| | ||| | | ||||| || | |||||||||| ||| ||||| || ||||| Sbjct 1089 TGATCCTTGATACGATGAATAAGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 1148 Query 76009 CGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATC 76068 |||||| ||||| | ||||| || || | |||||| | | | | |||| | | Sbjct 1149 CGCACCATAATACAAAGTTTCAAATATTTGTAAATTAAGCTTTCGTGATTCAGGTGAGCC 1208 Query 76069 AAAAGGATAATG--TAA--AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAA 76124 ||| ||| | | ||| ||||||| |||||| | || || | ||||| |||| Sbjct 1209 AAATGGAAATCGCATAATTGAGAATAA----ATCTGCCAACCCTTGGATACCAATTCCAA 1264 Query 76125 TAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 |||| | ||||| ||||| ||| ||||||| Sbjct 1265 TAGGACGATGTCGTTTATTAGAAGTTTCAGC 1295 >seq992 Length=79738 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 75985 AGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT 76044 ||||||||| ||||| || ||||| ||||| |||||||| ||||| ||| | | || Sbjct 42919 AGCTAGTTCACAACTTGCTTCTAAAGCACCATAATAAATGGTTTCATGAATTTGTATGTT 42978 Query 76045 AAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAG 76104 ||||||| ||||| | ||||||||||||| | | ||||||| |||||||| Sbjct 42979 AAGATCTCTAGCTTCTTTAGTATCAAAAGGATATTTCATTTTAATAAATAAATCTGCTAA 43038 Query 76105 TCCCTGAACTCCAATACCAATAG 76127 ||| || | ||||| ||||||| Sbjct 43039 TCCTTGGATACCAATTCCAATAG 43061 >seq74 Length=781666 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823 ||||||||||| | ||||||||| ||||| | |||||| || |||||||| || ||||| Sbjct 485162 GTATATGGTTCAATAGATTCATTATTTCCAAGAATTTGTGCTGTTGAAGCGGTAGGCATC 485103 Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT-TT 75882 ||||| | || || |||||| | |||||| | ||||| | ||||| |||| | Sbjct 485102 GGTGCTAATAACAATGAATTTCTAACTCCATGTTTAGCAATTTTTTTTTTTA-ATATATC 485044 Query 75883 CCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||| |||||||| || | || |||| ||| | ||| || || | ||| Sbjct 485043 CCAGTCCCAAAGGTCAGTAGGCTTTACATTCCACATATCATACTGCAAAAT 484993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712884164859840