Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_033829.1 Length=152388 Score E Sequences producing significant alignments: (Bits) Value seq1306 114 1e-20 >seq1306 Length=42871 Score = 114 bits (126), Expect = 1e-20 Identities = 163/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 129474 TTACCCACAAAATTATGATAATACTATGCATGAAGGTCGGAGCAATAAAGCTGCACATCT 129533 ||| || |||||||| |||| || |||| |||||||| || |||||| | || ||| Sbjct 9279 TTATCCGCAAAATTACGATAGCACGTTGCACGAAGGTCGTAGTAATAAAACGGCCCATTA 9220 Query 129534 TTTACCAAATGTAATTCGAGCGTCAAATGCGGCCGTTCGTAATTCAAATGCATTGTCGTT 129593 | || | | ||| | ||| || ||||| | || || | ||||| ||| | || Sbjct 9219 TATATCGACTGTGACTCGTGCTTCAAACGAAGCTTTTAGAAATTCTTCTGCTCTCGTGTA 9160 Query 129594 TCCAAACGATGCCATCGGTTAT-TAT-TGCCTTTTAAATACAAAAGATTTGAAATCGGCA 129651 |||| ||||| | |||| | | |||| | ||||| |||||||| ||||| || Sbjct 9159 TCCACGTGATGCGTTTAATTATCTGTGTGCCATG--AATACTAAAGATTTAAAATCTGCT 9102 Query 129652 GGTGAACAAAACGTTTTGGCTGATTTCGTTATAATGTGCGAAGAGA 129697 ||||||||||| |||||||| ||||| ||||| ||| ||||||||| Sbjct 9101 GGTGAACAAAATGTTTTGGCCGATTTTGTTATGATGAGCGAAGAGA 9056 Score = 105 bits (116), Expect = 7e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 6135 CATGATATTGTCGATGTTTGATATATCCCATTGGTTTCATAACCAGTTATAGATCGACGT 6194 || ||||| || | |||||||| ||||| |||||| |||||||||||| | ||| Sbjct 26826 CACGATATAGTAGCAGTTTGATAGATCCCTCGAGTTTCAAAACCAGTTATAGCTGTACGG 26885 Query 6195 ATAATCGACTCTTTACCACTAATATATTTTTTAATATTTGATATTGAGAAATTTGAAGAT 6254 | || || | |||||||| | || |||||| ||||| | | ||||||||||||| Sbjct 26886 ACGATAGATTGCTTACCACTCTTGTAGCGTTTAATGTTTGAAACTTTGAAATTTGAAGAT 26945 Query 6255 TCGAAGCGTTTGTATCGTTCCAATATCGCTTGTGGTGTTGTTATAACGGCACGTATAAAT 6314 || || || | || || || ||||||| || ||| | ||| | || |||| | | Sbjct 26946 TCAAATCGACTATAACGATCAGATATCGCATGAGGTACGGATATGAACGCTCGTACCAGT 27005 Query 6315 GACATAAAATGATTATAAGATTGTTCGCGCCAAATTCTCGGATCAAATATTATATACTCT 6374 ||| |||||||| |||||||| | ||| | ||| ||| | || ||| | ||| Sbjct 27006 GACGCGAAATGATTTGTGGATTGTTCCCTCCACAAAGACGGGTCATAGATAATAAATTCT 27065 Query 6375 TTA 6377 ||| Sbjct 27066 TTA 27068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487479248572960