Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq19105 118 1e-21 seq16702 111 2e-19 >seq19105 Length=237168 Score = 118 bits (130), Expect = 1e-21 Identities = 515/803 (64%), Gaps = 24/803 (3%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || ||||| ||||| |||||||| || | ||| || |||||||||| || ||||| Sbjct 36643 TTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTCCATGAACGAGAATGGATTC 36702 Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCA-GTTCGGCGATTAATCTATCCGCTACAAAT 16810 | | || |||| || | || ||| | || | | || | ||| || ||||| Sbjct 36703 TTTGTGTTGTAAATCTT---GCCCACGCCAAGCTCAACCAATAGGCGATCAGCGACAAAC 36759 Query 16811 TCTATATATTGGCACATTAATTCGCAGTTCATTCCTAT-AAGACGTACCGGAAGAGCTTC 16869 || ||||||| | |||| | | |||||||| || || ||| | || || || || || Sbjct 36760 TCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGTTG-ACGGGCAGCGCATC 36818 Query 16870 CGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCC-- 16927 || | || ||||| ||| || || ||| | || || | | |||||| Sbjct 36819 GGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATTTCAATGATGCGTTCCCG 36878 Query 16928 --TCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATC 16985 | || || || | | ||||| ||||| || || || || ||||| | | Sbjct 36879 ACTAGGCCGCTGCACC----AAATGTTGGAACATAAGCACCGCAAAGTCACAATGCAGAC 36934 Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 | || || | ||| | |||||| || ||||| | || ||||| ||| || |||| Sbjct 36935 CTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGCATAAGTCCACGCTTCT 36994 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || | || || |||| ||||| || || || || | ||||| | Sbjct 36995 TCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCTTCAACAGCAGCAAAAG 37054 Query 17106 CGATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGA-ATCCATTTCTGCACCCACTC 17163 | || | ||||| | | | || | ||| | | || ||||| | |||| || Sbjct 37055 CAATAATACGTTCACCAAAGTTGGCAGCCTTCG--AAGAGATCCAAGAAAGAGCCCAGTC 37112 Query 17164 GGCTTTTTGCTTTATGCAATC--CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCC 17221 || || |||| | || | ||||||||| ||||| || || | | ||| | Sbjct 37113 TGCCTTCCGCTTAA--CAGCCGGCATCGTTTCAATGGCATTGAAGAGATAGTCTCGCTGA 37170 Query 17222 TGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCC 17281 || | || | ||||| || || ||||| | |||||||||||||| || | |||||| Sbjct 37171 TGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAATGCACATTCTCC 37230 Query 17282 ATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAAT 17341 ||||| ||||| || || |||||||| || || || | | || ||||| | || Sbjct 37231 ATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACTTCTTGGCTAAAA 37290 Query 17342 CGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGC 17401 ||||| | ||||||||||| || || || || || || || || ||||| | |||| Sbjct 37291 CGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAGGCCAACACATGC 37350 Query 17402 TTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATA 17461 ||||||| || | ||||| | ||| || | | || ||||| | | Sbjct 37351 GATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCATGTCCTTGGACAGA 37410 Query 17462 TCCACTTCTTCGGGGGTCCAAAA 17484 |||||||||||| |||||| || Sbjct 37411 TCCACTTCTTCGACGGTCCAGAA 37433 >seq16702 Length=433992 Score = 111 bits (122), Expect = 2e-19 Identities = 185/261 (71%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 |||||||| || ||||| ||||| | || ||| |||||||| || | || |||| ||| Sbjct 196749 TTCATATAGCGAATCTTGCCGAATATGGCACGCTCCTTCCATGCGTTATCATGGATACCC 196690 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | || | ||| | ||| ||||| || || |||||||| ||||| | ||| |||||| Sbjct 196689 CCGACAGACCACATGCAGCCCACATAACCATTGGGATCACGGCCATCCAGACT-GTATTT 196631 Query 119902 ATCGTTTAAGTAGATAC-AGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960 ||||| | | || | | || | ||||| || || || || ||||||| |||| Sbjct 196630 GTCGTTCAGCAATATGCTATACTCC-AACGCCTGCTCTGGTGTTTCTGTCCATTCAAGTA 196572 Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020 | || || ||||| ||||| | | ||||||||||||| || ||| |||| || | Sbjct 196571 TCTTCTTGGCCCAATACATTCTCAGAAATCCATGCATTTTGCCCTCATTGACCAGCTGCA 196512 Query 120021 GTTGTGCGGCGTTCCATAAGG 120041 ||| || | |||||| |||| Sbjct 196511 ATTGCGCCGAGTTCCA-AAGG 196492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517375107540720