Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq19105 152 5e-32 seq16702 96.9 4e-15 >seq19105 Length=237168 Score = 152 bits (168), Expect = 5e-32 Identities = 348/524 (66%), Gaps = 0/524 (0%) Strand=Plus/Plus Query 16187 TGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCG 16246 |||| ||||| || ||| ||||| ||||| || ||||| || | ||| | |||| Sbjct 36898 TGTTGGAACATAAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCG 36957 Query 16247 TTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAAT 16306 ||||| || || | || ||||| ||| || ||||| | |||||| || | ||||| Sbjct 36958 TTGGAGAATGTAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAG 37017 Query 16307 GACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTA 16366 ||| ||||| || || ||||||| |||||||| || | ||||| | | | Sbjct 37018 CTCCCACTGAAGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTG 37077 Query 16367 GCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATC 16426 ||| | || | ||||| | |||| || || || | || | | |||| Sbjct 37078 GCAGCCTTCGAAGAGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATC 37137 Query 16427 GTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATC 16486 ||||| ||||| || || | | ||| | ||| ||| | ||||| || ||||| Sbjct 37138 GTTTCAATGGCATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATG 37197 Query 16487 AGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCAT 16546 || | |||||||||||| || || | ||||| ||||| ||||| || ||||| ||||| Sbjct 37198 AGCACACTGTACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAA 37257 Query 16547 CGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATA 16606 || ||||| | | || ||||| | ||| ||||| |||| || || || || || Sbjct 37258 CGTGCCTCGGTCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATT 37317 Query 16607 CCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTA 16666 || ||| |||||||| || ||||| | ||| ||||||| || | | ||| Sbjct 37318 CCATCAGAAGCAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTA 37377 Query 16667 AGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTC 16710 || | |||||| | | || ||||| | |||||||||||| Sbjct 37378 AGCTTGGCCCAATCAGTCATGTCCTTGGACAGATCCACTTCTTC 37421 >seq16702 Length=433992 Score = 96.9 bits (106), Expect = 4e-15 Identities = 180/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 ||||| || || ||||| || |||| || ||||||||||||||| | || |||| || Sbjct 196749 TTCATATAGCGAATCTTGCCGAATATGGCACGCTCCTTCCATGCGTTATCATGGATACCC 196690 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | || | ||| | || ||||| || || |||||||| || || | ||| ||| || Sbjct 196689 CCGACAGACCACATGCAGCCCACATAACCATTGGGATCACGGCCATCCAGACT-GTATTT 196631 Query 119055 ATCGTTTAAGTAGATAC-AGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 ||||| | | || | | || | ||||| || || || | ||||||| |||| Sbjct 196630 GTCGTTCAGCAATATGCTATACTC-CAACGCCTGCTCTGGTGTTTCTGTCCATTCAAGTA 196572 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 | || || ||||| ||||| | | | | || |||||||| ||||| || | || ||| | Sbjct 196571 TCTTCTTGGCCCAATACATTCTCAGAAATCCATGCATTTTGCCCTCATTGACCAGCTGCA 196512 Query 119174 GTTGTGCGGTGTTCCATAG 119192 ||| || | |||||| || Sbjct 196511 ATTGCGCCGAGTTCCAAAG 196493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511245927311280