Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq25128 461 9e-125 seq19105 273 3e-68 >seq25128 Length=30855 Score = 461 bits (510), Expect = 9e-125 Identities = 1259/1911 (66%), Gaps = 34/1911 (2%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 20196 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 20137 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 || || || || |||| | | ||||| || ||||| ||| || | || Sbjct 20136 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 20077 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 20076 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 20017 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 53037 || || ||| | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 20016 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 19958 Query 53038 TTCTGGAAGG--TTTG-TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094 | |||| | || | | || || || || |||| | | || || |||||| || Sbjct 19957 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 19898 Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 53154 ||||||| |||||| | ||||||||| | | | | ||| |||| || || | Sbjct 19897 GTCATCATCCCATAAATCCAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 19838 Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 53214 || ||||| ||||| || | || |||||||| || |||||||| || | ||||| Sbjct 19837 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 19778 Query 53215 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-T 53273 |||||| |||| || || ||||| ||||| || ||||| || ||||| || | | | | Sbjct 19777 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCAC-AAGCAGCGAGT 19719 Query 53274 TTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 53331 |||||| || ||| ||| |||||| |||||||| ||||| |||||| | | Sbjct 19718 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGT 19661 Query 53332 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 53390 ||| || ||||| || || || | | || | || | | Sbjct 19660 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 19602 Query 53391 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 53450 | || || || || || ||||| | ||| || |||||||| ||||| | ||||| || | Sbjct 19601 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 19542 Query 53451 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 53510 | |||||||||||||||| || ||| || | |||| || ||| | ||| | Sbjct 19541 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGC 19482 Query 53511 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 53570 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 19481 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 19422 Query 53571 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGT 53630 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | | Sbjct 19421 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 19362 Query 53631 TTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA 53687 ||||| ||| || || || ||||| ||||| ||||| ||| | ||| Sbjct 19361 TTCTGGTGACAGTT---TTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGTTTTCTCTG 19305 Query 53688 ---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 | |||||||| ||||| || || ||||||| ||| || ||||| | ||||| | Sbjct 19304 AAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTG 19245 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 ||| ||||| | || || ||||| || || || || |||||||| || | ||| || | Sbjct 19244 CCGAATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCT 19185 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 |||| ||||| |||| || | || || | || ||| | || || ||||| |||| | Sbjct 19184 GATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTT 19125 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCTTT 53923 | ||||| | ||| || | ||| | | || || || | | |||||| | | Sbjct 19124 GAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCT 19065 Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 | || || || |||||||| ||||| || || |||||||| | ||||| || Sbjct 19064 -CGCTCTCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCG 19006 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 ||||| | | ||||||| || |||||| || | | | | ||| || |||||||| Sbjct 19005 GGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAAC 18946 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 ||||| || ||||| | || || ||||| | | ||| || || || || || || Sbjct 18945 AGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTG 18886 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 |||||||| || || | |||| | | ||||| |||||||| ||||||| ||| |||| Sbjct 18885 TTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCA 18826 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 | | | || ||||| ||| || || ||||| | || | ||| |||||| | ||| Sbjct 18825 AAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACT 18766 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 54283 || | ||| || | | |||||| || | ||||| || || |||| || | || || Sbjct 18765 CTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTG 18706 Query 54284 GCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341 |||||||| | | | |||| || || || || || || ||| ||||| | ||| | Sbjct 18705 GCACGAATACAATGCACATTG--AGTCCAATGCCACCAGCGGATTTGGAGATCATTGCAC 18648 Query 54342 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAA 54398 | | | | | | | ||||| || || ||| | |||| |||| || || | Sbjct 18647 ACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCAT--TGTT-AGAAGGA 18591 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 |||| ||||| ||| ||||| | || | ||| ||||| || || || || |||| Sbjct 18590 AACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAGCGTTGGCGATGCATGCG 18531 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518 |||| | ||| || | |||||||| ||||||| ||| || || || || || Sbjct 18530 TAAAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCAT 18471 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 | ||||| | || || | ||| | ||||||||| || | ||| |||| ||| || | Sbjct 18470 GGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGA 18411 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 | || ||||| || || || | || || || |||||||||||||| ||| || | Sbjct 18410 TCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCAC 18351 Query 54639 GTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 54689 | || || || || ||||||| || ||| | ||| ||||| |||| Sbjct 18350 GATCATAGATGATCGCTGAGTTCAGGCGATCTGAGTTTTTCTTAACGACAT 18300 >seq19105 Length=237168 Score = 273 bits (302), Expect = 3e-68 Identities = 606/897 (68%), Gaps = 24/897 (3%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 23844 ||||||| || ||||||| | ||| |||||| || || |||||||||| Sbjct 36563 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 36622 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 || ||||||||||| || ||||| || || ||||| || || || || || | | Sbjct 36623 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 36682 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAAT-TCAGAAATC 23963 ||||||| | ||||||| | || || || ||| | |||| ||| | | Sbjct 36683 CCATGAACGAGAATGGATTCTTTGTGTTGTAAAT-CTTGCCCACGCCAAGCTCA---ACC 36738 Query 23964 AAT---CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATA 24020 ||| | ||| ||||||||||| |||||| ||||| |||| ||||| || || Sbjct 36739 AATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATC 36798 Query 24021 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 | || || || || || | || || || || || ||||||| || || || ||||| Sbjct 36799 AAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTAT- 36857 Query 24081 ATAGATCTTACTGTTTC-TTC---ACTCGGTGGATACAATAAATGTTTAAACATCAAACA 24136 ||| | | || | | ||| ||| || | | || ||||||| ||||| || || Sbjct 36858 ---GATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCA 36913 Query 24137 T-GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 24195 || || || || || ||||| || || | | || ||||||||||| || || |||| Sbjct 36914 CCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTC 36973 Query 24196 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAA 24255 | ||||| || |||||||| || ||||| || ||||| ||||| ||| ||||| | Sbjct 36974 CAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGA 37033 Query 24256 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTC--ATGTA 24312 | ||||| || || ||||| ||||||| | ||| ||| | ||| || || | | Sbjct 37034 TGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGA 37093 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 |||| ||||||| || |||||| || ||| ||||| || || || ||||| | Sbjct 37094 TCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGA 37153 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 ||||||||| | | || | ||| | | ||| || ||||| | | ||| ||||||| Sbjct 37154 AGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTT 37213 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 | ||||| | || || ||||| || || || || || || || | |||||||| | || Sbjct 37214 CGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCT 37273 Query 24493 GTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 | |||||| | ||| ||||| | | |||||| || || ||||| ||| || |||| Sbjct 37274 GCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAA 37333 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 24612 | || ||||| ||||| ||| |||| || | || || || ||||||| Sbjct 37334 AGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAG 37393 Query 24613 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 | || || || || | |||||||||||| || ||||| || ||||| || |||| || Sbjct 37394 TCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 37450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593526013261920