Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq24486 84.2 2e-11 seq20348 82.4 6e-11 >seq24486 Length=213816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 25029 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 25088 || ||||||||||| ||| | ||||| ||||| ||||| ||||| ||| || ||| Sbjct 88139 GTCAAAATGCAAATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAG 88198 Query 25089 CCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 25148 ||| | || || | | || ||||| || || || || || || | ||| | Sbjct 88199 CCCTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCA 88258 Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||| | || ||||| || ||||| || |||| ||| | ||| || |||| Sbjct 88259 GATCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGAC 88318 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| || || ||||| || || | ||| ||||| Sbjct 88319 TACAACATCCAGAAGGAGTCGACCTTGCACTTGGTG 88354 >seq20348 Length=30608 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/222 (68%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 25025 TAGTGTAAAA--ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAA 25082 ||||||| | |||||||| ||| | ||||| | ||||| || ||||| || || Sbjct 12681 TAGTGTACGACGATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAG 12740 Query 25083 ACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTG 25142 ||||| | || || | | || |||| || ||| || |||||||| | Sbjct 12741 GTCGAACCGTCGGATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATT 12800 Query 25143 CCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATG 25202 || ||||||||| | | |||||||| ||||| |||||||||||| ||| | Sbjct 12801 CCTCCAGATCAACAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTT 12860 Query 25203 GCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||||||||| ||||| || ||||| | ||| ||||| Sbjct 12861 TCCGATTACAATATCCAAAAAGAGTCTACATTGCACTTGGTG 12902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410664856432556