Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq19105 313 3e-80 seq24486 132 5e-26 >seq19105 Length=237168 Score = 313 bits (346), Expect = 3e-80 Identities = 523/749 (70%), Gaps = 8/749 (1%) Strand=Plus/Minus Query 116652 AAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCG 116711 || |||| || || ||||||||||||||||| || ||||| ||||||||||||| || | Sbjct 37450 AACAGGCTGAAGCATCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTG 37391 Query 116712 ACTGGGAGC-GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 | |||| |||| | || || ||||| |||||||| ||| ||| ||||||| || Sbjct 37390 ATTGGGCCAAGCTT-ACGGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTCTTT 37332 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAG 116830 || || || || || || ||||| ||||||||||| ||||| || || |||||| Sbjct 37331 GCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGCCAAGAAGTGCAG 37272 Query 116831 GTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAA 116890 ||| ||||||| || ||||| || ||||| ||||| ||||||||||| ||||| || ||| Sbjct 37271 GTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTCCGAA 37212 Query 116891 ATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948 ||||| ||||| ||||| || | | | || || | || || | | | Sbjct 37211 ATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGAGACT--ATCTCT 37154 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 | || ||||| || ||||||||| || || |||||| || ||||| || |||| Sbjct 37153 TCAATGCCATTGAAACGATGCCGGCTGTTAAGCGGAAGGCAGACTGGGCTCTTTCTTGGA 37094 Query 117009 TCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCG 117068 || | | | ||| ||| || || || | | || || || || || || ||| Sbjct 37093 TCTCTTCGAAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCTGCTGTTGAAGGCA 37034 Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 ||||||| || || || || |||| || ||||| ||||| || || || ||||| | Sbjct 37033 TCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTATGCCTG 36974 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC-C 117187 | || || ||| |||||| | ||||| | || || ||||||||||| |||||||| Sbjct 36973 GACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACTTTGCGG 36914 Query 117188 TGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTC 117247 || || ||||| | |||||||||||||| || || || ||| ||| || ||| | Sbjct 36913 TGCTT-ATGTTCCAACATTTGGTGCAGCGGCCTAGTCGGGAACGCATCATTGAAATCATA 36855 Query 117248 ACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTG 117307 || || || || | || |||||| ||||||||||| |||||||| || || | Sbjct 36854 ACGGATGCTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCGTCAACTTGATT 36795 Query 117308 GGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTC 117367 || | || || | |||||| |||| |||||||| ||||| || | || || | Sbjct 36794 GGCATGAACTGTGCTCTGATGTCCGAATATATCGAGTTTGTCGCTGATCGCCTATTGGTT 36735 Query 117368 GAGCTGGTCGGCGCCAAGCACTACAACAC 117396 ||||| | || | |||| |||||||| Sbjct 36734 GAGCTTGGCGTGGGCAAGATTTACAACAC 36706 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||||| ||||| ||||||||||| || ||||||||||| ||||||| ||| Sbjct 37876 GAGCCATTGCTGCGAGAGAATCCCCGCCGGTTTGTCATTTTCCCCATTCAATACCATGAC 37817 Query 116636 ATGTGGCGCATGTACAAAAAGG 116657 || |||| ||||||||||||| Sbjct 37816 ATTTGGCAAATGTACAAAAAGG 37795 >seq24486 Length=213816 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| ||||| | || ||||| ||||||||| | || || || || Sbjct 88142 AAAATGCAAATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCC 88201 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| ||||| || ||| | || Sbjct 88202 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGAT 88261 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || || |||| ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 88262 CAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 88321 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||| | || |||| | ||| |||| Sbjct 88322 AACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTGCG 88359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515049473915040