Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq24188 105 5e-18 >seq24188 Length=1289977 Score = 105 bits (116), Expect = 5e-18 Identities = 271/406 (67%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 97057 TGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCA 97116 ||||| | ||| | |||| |||||| | ||||| | ||| || ||||| || | Sbjct 950395 TGATTAAGATACACATGAGAATCTCCCATGGTGTGGACAAAGTCACCAGGCTTCAATCCG 950336 Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || |||||||| ||||| | || | || | ||| || ||||||||||| ||||| Sbjct 950335 GTCACATGGGCAATCATGTAGGTGAGCAGCGCATAAGAGGCGATGTTAAAAGGAACCCCG 950276 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCC-----ATCAC-AC 97230 |||||||| || || || || || | |||||||| || | ||| || | || Sbjct 950275 AGTCCCATGTCTGCACTTCGCTGGTACAGATGACAGGAGAGTTCTCCTCGAGATTGCGAC 950216 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 ||||| ||||| ||| || || || |||| |||||||| || | ||| ||| | Sbjct 950215 ACATAGAACTGCACCAAGCAGTGGCAAGGAGGCAGTGCCATTTTGGGTATATCCAAGGGA 950156 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGT-GTATGGTATTAATTAT 97349 ||||| || |||| | || | | ||| | ||| |||| | | || |||| ||| | Sbjct 950155 TTCCACGCCGACATAATGATACGACGATCCG-AGGGATTGTTTCGAATCGTATCAATCAC 950097 Query 97350 CTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCT-TGATATTCTG 97408 |||| | ||||| | ||||| ||| | || | | | | | | |||| || | Sbjct 950096 TTGCTGCAGCTGATCGATGCCTTGTCCGCTGTAGTCAT-CATCGCAGGTGCGATACTCGG 950038 Query 97409 CTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCC 97454 |||||||||| | ||| ||||| || || || || || || || || Sbjct 950037 CTCCAAAATGACGCCACTGGAAGCCGTAGACCGGACCCAGATCCCC 949992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346672616663780