Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq25128 159 3e-34 seq24486 129 5e-25 seq20348 114 1e-20 seq25099 98.7 9e-16 seq14047 98.7 9e-16 >seq25128 Length=30855 Score = 159 bits (176), Expect = 3e-34 Identities = 478/730 (65%), Gaps = 22/730 (3%) Strand=Plus/Minus Query 133221 TGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAAC 133280 || || ||||| | ||||| |||| | |||||| ||| || | || || || || Sbjct 19851 TGATTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATAC 19792 Query 133281 GGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCC 133340 || || || || || || || || | ||||| || || | ||||||||||| ||| Sbjct 19791 GGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCC 19732 Query 133341 ACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCC 133400 || | || |||||||| ||||| | || || || || | | | | |||| ||| Sbjct 19731 ACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCC 19672 Query 133401 CACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGT-CGTAGTTGTGAAAATGCAAAAT 133459 || || || ||| || ||| ||| | || | || | |||| ||| Sbjct 19671 CAAAGGTTTGTGGG-TG-----------TCTTGTCCCACATA-TCGT---ACTGCAGAAT 19628 Query 133460 ACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTC 133519 ||| |||||||||||| | | ||| | ||||||||| |||| ||| |||||||| Sbjct 19627 TCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTC 19568 Query 133520 GCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCT 133579 || || ||||| | || || |||| |||||||| ||| | |||| || Sbjct 19567 ACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATAC 19508 Query 133580 GGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAACCCTGTAT 133639 ||| | ||| || || |||| | | | |||| || |||||||| || ||||| | Sbjct 19507 GGCTTTGTCACTCTCATAGGGAAAGCGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAAC 19448 Query 133640 GCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTG 133699 ||| | ||| ||||| |||||| || |||| ||| | ||||| | ||||||| Sbjct 19447 GCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAGTA 19388 Query 133700 GTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAA 133759 |||| || ||||| ||||| | ||| | | || | ||||||| | | || || Sbjct 19387 ATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTTAGTTT 19328 Query 133760 AACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAG 133819 | || ||||| || | || ||| || || | || | ||| || || | Sbjct 19327 CTTGAAATCGAATGTTTT--CTCTGAAGTC-ACAAACATATTCAAGGCTATCGATGCCAA 19271 Query 133820 ATTACAAACGGCCGTCTCGTTCTCGT-CGCAATACTGGACGATCTCGGCGCAGAGGTTGC 133878 ||| || ||||| |||| || || | |||| | || || |||| ||||||||||| Sbjct 19270 ATTGCAGACGGCAATCTC-ATCGGGTGCCGAATATTCAACAATTTCGGTGCAGAGGTTGC 19212 Query 133879 TGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATA 133938 |||||||||||||||| | ||| | |||||||| | |||||| || ||| | | Sbjct 19211 TGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGA 19152 Query 133939 GCATGTACGG 133948 |||||||||| Sbjct 19151 GCATGTACGG 19142 >seq24486 Length=213816 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||| | || ||||| || || |||||||| ||| Sbjct 88373 TACCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGG 88314 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| |||||| ||||| || |||||| |||| |||||||| ||||| || | Sbjct 88313 ACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGG 88254 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | |||| |||||| | | ||| | Sbjct 88253 GAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCA 88194 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || ||||| |||| ||||| || || || ||||| Sbjct 88193 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCAT 88145 >seq20348 Length=30608 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | | ||||||||| | ||||||||||||||| || ||||||||| Sbjct 12920 ACCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGA 12861 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||||| ||| || | || || || || |||| | |||||| ||||| ||||| Sbjct 12860 AAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGG 12801 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || || ||||| ||| || ||| || | ||||| ||| |||| ||||| Sbjct 12800 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 12741 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || || || || || ||||| || || || ||||| Sbjct 12740 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq25099 Length=83779 Score = 98.7 bits (108), Expect = 9e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| |||||||| ||||| | ||||| |||||| Sbjct 21209 ACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGAAAGGGTGCGACCATCCTCC 21268 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| || || ||| ||||||||||||||||||| ||||| || || ||||| ||| Sbjct 21269 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCCTTCCTTATCT 21325 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||||||||| | | ||| |||||||| | |||||||| || || || || || ||| Sbjct 20930 ACCTCCGCGGAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGA 20989 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || |||||| || || || ||||| ||||||||||||||||||| || || Sbjct 20990 CAAAGTACGACCATCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCTGGGGG 21049 Query 118631 TAT 118633 || Sbjct 21050 GAT 21052 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||| | |||||||| | ||| ||||| || || || || || ||| Sbjct 22487 TACCACCACGGAGTCTGAGAACCAAGTGCAGTGTTGACTCCTTCTGGATATTATAGTCGG 22546 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 || |||||| |||||| ||||| || |||||| |||| |||||||||||||| || Sbjct 22547 ACAAAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCTGG 22604 >seq14047 Length=15719 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || |||| || | |||||||| | ||| || || |||||||| |||||||| Sbjct 15699 TACCACCACGTAGTCGGAGGACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATCTG 15640 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| |||||| ||||| || || ||| |||| |||||||||||||| || | Sbjct 15639 AAAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 15580 Query 118630 GTATGCCCTCCTTGTCT 118646 | || || || |||||| Sbjct 15579 GGATTCCTTCTTTGTCT 15563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433691058284968