Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq24486 114 1e-20 seq17410 93.3 5e-14 seq21432 89.7 6e-13 seq20348 86.0 7e-12 >seq24486 Length=213816 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| ||||| || |||||| || || ||||| || | |||||| || | Sbjct 88360 ACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCC 88301 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || || ||||| || || | || | | |||||| Sbjct 88300 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATTCCCTCCTT 88241 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| || | | ||||| | ||||| || | ||||| Sbjct 88240 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACCTCCAAGGTGAT 88181 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 ||| ||||| || | || || || |||||||||||||| ||| Sbjct 88180 GGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCATTTTGACG 88138 >seq17410 Length=23049 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/87 (85%), Gaps = 4/87 (5%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 10172 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 10113 Query 60126 TACTACCGAGGA-TTGAATATATAACT 60151 ||||| |||||| ||||| |||||| Sbjct 10112 TACTATCGAGGACTTGAA---ATAACT 10089 >seq21432 Length=7262926 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2155420 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2155361 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2155360 TACTATCGAGGA 2155349 >seq20348 Length=30608 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||||||| ||| ||||| ||||||||||| | ||||| ||| | || || Sbjct 12902 CACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTC 12843 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||||| || || || || | ||||| || || | || | | || |||||| | Sbjct 12842 CAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCC-T 12784 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || | ||||| | | | || || || ||| || || | |||||||| | Sbjct 12783 GAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCT 12724 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || || ||||||||||| Sbjct 12723 TACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571629228987120