Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq19105 159 3e-34 >seq19105 Length=237168 Score = 159 bits (176), Expect = 3e-34 Identities = 573/892 (64%), Gaps = 8/892 (1%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | ||||||||| || ||| || ||||| ||| Sbjct 36563 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 36622 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||| ||| |||| || ||||| || ||||| || || || || || | | Sbjct 36623 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 36682 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC-AAT 16063 |||| || || ||||| |||| || || | | || |||| |||| ||| Sbjct 36683 CCATGAACGAGAATGGATTCTTTGTGTTGTAA-ATCTTGCCCACGCCAAGCTCAACCAAT 36741 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 | | ||| || ||||| || ||||| | ||| | | |||||||||| || || || Sbjct 36742 AGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAG 36801 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 || || || | || || || | || | | || ||| | || || || | || || Sbjct 36802 TTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATT 36861 Query 16184 TCTCTTAC---TACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 || | | | | | | | || | | | || |||| ||||| | ||| Sbjct 36862 TCAATGATGCGTTCCCGACTA---GGCCGCTGCACCAAATGTTGGAACATAAGCACCGCA 36918 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 || |||||||||| ||||| || | | || || ||||| || |||||||| || ||| Sbjct 36919 AAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGC 36978 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||| || || || | ||| || || | ||||| ||| ||||| || ||| Sbjct 36979 ATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCT 37038 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420 ||||| || ||||| |||| | || ||||| | | | || ||||| Sbjct 37039 TCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGATCCAA 37098 Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 |||||| | ||| || | |||||| ||| | || || ||||| || | | Sbjct 37099 GAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAAGAGA 37158 Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 || | | | | ||| ||||| || || || || | ||| |||||||| ||| Sbjct 37159 TAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAA 37218 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 || | ||||||||| || ||||| || ||||||||||| | || |||| | || ||| Sbjct 37219 TGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACT 37278 Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 || | ||| | ||| | | ||||||||||| |||||||| ||| ||||| || Sbjct 37279 TCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAG 37338 Query 16661 GCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAA 16720 || | | || || |||| || ||||| | ||| || ||| |||| | Sbjct 37339 GCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCATG 37398 Query 16721 TCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 || || || | ||| || ||||| || ||||| || || || |||||| || Sbjct 37399 TCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 37450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462359636984400