Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq6700 122 3e-23 >seq6700 Length=1378 Score = 122 bits (134), Expect = 3e-23 Identities = 175/246 (71%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 33402 GCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTAC 33461 ||||||||||| || || ||||| | || | | || ||||| ||| |||| || Sbjct 140 GCCTCAGCTTCTGCTGGGGGGATGTTTCCAATGGAGGACAGGAGCCGCCGATTGTTGAAC 199 Query 33462 CAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC 33521 ||| ||||||||| || || |||||||| || | |||||| ||||||| | || Sbjct 200 CAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTTTTCCATNCCCCT-GC 258 Query 33522 CGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAG 33581 |||| || ||||| || ||||| || ||||| || || || || || ||||| || ||| Sbjct 259 CGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCGAGGGCATTATCATAG 318 Query 33582 CTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG 33641 || || ||| |||||||||| ||| || || |||||||| | || ||||| Sbjct 319 GAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCCAGTCTTTGCGTGTAG 378 Query 33642 CGAATG 33647 |||||| Sbjct 379 CGAATG 384 Score = 82.4 bits (90), Expect = 3e-11 Identities = 106/145 (73%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 33728 AAGTGCATCCAGAACAAAGTCCGT---GGTCATCGACGAGCTGACCCGCCAGCCAACAAT 33784 ||| |||||||| || ||||| || || | | || ||| || |||||||| ||||| Sbjct 470 AAGGGCATCCAGCACGAAGTCGGTATGGGCCGTTGATGAG---ACACGCCAGCCCACAAT 526 Query 33785 ACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGAC 33844 ||||| ||||| || || | ||| || || || | |||| |||| || || || Sbjct 527 GACCCGGGCAAACACATCAATGATGAAGGCTACATAAACAAAGCCCAGCCAAGTGGAAAC 586 Query 33845 ATACGTAAAATCCGACACCCAGAGC 33869 ||| ||||||||||| ||||||||| Sbjct 587 ATAAGTAAAATCCGAAACCCAGAGC 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170618587557580