Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq25128 441 9e-119 seq19105 288 1e-72 >seq25128 Length=30855 Score = 441 bits (488), Expect = 9e-119 Identities = 1229/1870 (66%), Gaps = 28/1870 (1%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 20196 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 20137 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 || || || || |||| | | ||||| || |||| ||| || | || Sbjct 20136 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 20077 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 20076 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 20017 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62275 || || ||| | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 20016 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 19958 Query 62276 TTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 | |||| | || | | || || ||||| |||| | | || || |||||| || Sbjct 19957 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 19898 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 ||||||| |||||| | ||||||||| | | | | ||| | || || || | Sbjct 19897 GTCATCATCCCATAAATCCAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 19838 Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452 ||| ||||| ||||| || | || |||||||| || |||||||| || | ||||| Sbjct 19837 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 19778 Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-T 62511 |||||| |||| || || ||||| ||||| || ||||| || ||||| || | | | | Sbjct 19777 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCAC-AAGCAGCGAGT 19719 Query 62512 TTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA 62569 |||||| || ||| ||| |||||| ||||||| ||||| |||||| | | Sbjct 19718 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGT 19661 Query 62570 CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62628 ||| || || ||||| || || || | | || | || | | Sbjct 19660 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 19602 Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAAT 62688 | || ||||| || || ||||| | ||| || | |||||| ||||| | ||||| || | Sbjct 19601 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 19542 Query 62689 AAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 62748 | |||||||| ||||||| || ||| || | |||| || ||| | ||| | Sbjct 19541 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGC 19482 Query 62749 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62808 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 19481 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 19422 Query 62809 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62868 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | || Sbjct 19421 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 19362 Query 62869 TTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA 62925 ||||| ||| || || || ||||| ||||| ||||| ||| ||| Sbjct 19361 TTCTGGTGACAGTT---TTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGTTTTCTCTG 19305 Query 62926 ---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 | |||||||| ||||| || | ||||||| ||| || ||||| | ||||| | Sbjct 19304 AAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTG 19245 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 ||| ||||| | || || ||||| || || || || ||||| || || | ||| || | Sbjct 19244 CCGAATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCT 19185 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 |||| ||||| |||| || | || || | || ||| | ||||| ||||| |||| | Sbjct 19184 GATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTT 19125 Query 63103 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTT 63161 ||||||| | ||| || | ||| | | | || || || | | |||||| || | Sbjct 19124 GAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCT 19065 Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 | || || || ||||||| || || || || |||||||| | ||||| | Sbjct 19064 -CGCTCTCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCG 19006 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||| | | ||||||| || |||||| || | | | | ||| || |||||||| Sbjct 19005 GGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAAC 18946 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 ||||| || ||||| | || || ||||| | | ||| || || || || || || Sbjct 18945 AGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTG 18886 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||||| || || | |||| | | ||||| |||||||| ||||||| ||| ||||| Sbjct 18885 TTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCA 18826 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | | || ||||| ||| || || ||||| | || | ||| |||||| | ||| Sbjct 18825 AAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACT 18766 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 || | ||| || | | ||| ||||| | ||||| || || |||| || || || Sbjct 18765 CTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTG 18706 Query 63522 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 |||||||| | | | |||| || || || || || || ||| ||||| | ||| | Sbjct 18705 GCACGAATACAATGCACATTG--AGTCCAATGCCACCAGCGGATTTGGAGATCATTGCAC 18648 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | | | | | | | |||||||| ||| ||| | ||| | || || |||| Sbjct 18647 ACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCATTGTTAGAAGGAAAC 18588 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | ||||| ||| ||||| | || | ||| ||||| || || || || ||||||| Sbjct 18587 ACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAGCGTTGGCGATGCATGCGTAA 18528 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63759 | | ||| || | |||||||| ||||| | ||| || || || || ||| | Sbjct 18527 AATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGGA 18468 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTT 63819 |||| | || || | ||| | ||||||||| || | ||| | |||||| || || | Sbjct 18467 TTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGATCT 18408 Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879 | | ||| || || || | || || || |||||||||||||| ||| || || | Sbjct 18407 TTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCACGAT 18348 Query 63880 CGTAAATAAT 63889 | || || || Sbjct 18347 CATAGATGAT 18338 >seq19105 Length=237168 Score = 288 bits (318), Expect = 1e-72 Identities = 603/892 (68%), Gaps = 14/892 (2%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 33291 ||||||| || ||||||| | ||| |||||| || || |||||||||| Sbjct 36563 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 36622 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 || ||||||||||| || ||||| || || ||||| || ||||| || || | | Sbjct 36623 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 36682 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 ||||||| || ||||| | |||||||| || | || | ||| | || Sbjct 36683 CCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACGCCAAGCTCA---ACCA 36739 Query 33412 AT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 || | ||| ||||| || || |||||| ||||| |||| ||||| || || | Sbjct 36740 ATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCA 36799 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 || || || || || | || || || || || ||||| | || |||| ||||| | Sbjct 36800 AGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGA 36859 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACAT-GCG 33587 | | | | ||| ||| || | || | ||||||| ||||| || || || Sbjct 36860 TTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCACCGCA 36918 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 || || || |||||||| || || | | || |||||||| || || || ||||| ||| Sbjct 36919 AAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGC 36978 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 || || |||||||| || ||||| || ||||| || || || |||||||| ||| Sbjct 36979 ATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCT 37038 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC--ATGTATCCAC 33764 || || |||||||| ||||||| | || ||| | ||| || || | ||||| Sbjct 37039 TCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGATCCAA 37098 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 ||||||| || |||||| || ||| ||||||||||| |||||||| |||||| Sbjct 37099 GAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAAGAGA 37158 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 |||| | | || | ||| | | ||| || || || | | ||| |||||||| ||| Sbjct 37159 TAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAA 37218 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 || | || || ||||| ||||| || || || || || | |||||||| | ||||||| Sbjct 37219 TGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACT 37278 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| | ||| ||||| | | |||||| || || ||||||||| || ||||| || Sbjct 37279 TCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAG 37338 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064 ||||| ||||| ||| |||| || | || || || ||||||| | || Sbjct 37339 GCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCATG 37398 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 34116 || || || | |||||||||||| || ||||| || ||||| || |||| || Sbjct 37399 TCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 37450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629610122337120